Jatropha Genome Database

JcCB0444321.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0444321.10 - phase: 0 /pseudo/partial
         (115 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01003685001 assembled CDS                                       144   1e-35

>GSVIVT01003685001 assembled CDS
          Length = 229

 Score =  144 bits (362), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 64/80 (80%), Positives = 73/80 (91%), Gaps = 1/80 (1%)

Query: 37  HVNIITLSPC-FVALQEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVIWMAPFVPQWYA 95
           +++I+   P  F+ ++EVHYNQHGLLLLEGQGIYRLGDSWYP+QAGD IWMAPFVPQWYA
Sbjct: 150 NIHIMDFQPGEFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPIQAGDAIWMAPFVPQWYA 209

Query: 96  ALGKTRTRYLLYKDVNRNPL 115
           ALGKTR+RYLLYKDVNRNPL
Sbjct: 210 ALGKTRSRYLLYKDVNRNPL 229