Jatropha Genome Database

JcCB0437881.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0437881.10 - phase: 0 /TE
         (583 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01012583001 assembled CDS                                        72   1e-12

>GSVIVT01012583001 assembled CDS
          Length = 96

 Score = 71.6 bits (174), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/96 (36%), Positives = 58/96 (60%), Gaps = 2/96 (2%)

Query: 304 IDVIGKIHPKASNGHQFILVAIDYFTKWIEAASYSVLNAKNAAQFVRTNILCQYGTPFEI 363
           +D++G + P A    +F+L+A DYF+KW+EA +Y+ +  K+  +F+  NI+ ++G P EI
Sbjct: 1   MDIVGPL-PTAGAQKKFLLIATDYFSKWVEAEAYANIKDKDITKFIWKNIIYRFGIPQEI 59

Query: 364 ITHNGFHFQS-EFFDLLKQKKIQHHKSSPYRPQTNG 398
           I  NG  F S  F     + KI++  S+P  P+  G
Sbjct: 60  IADNGLQFDSITFQTFYSELKIKNLYSTPRYPKAMG 95