Jatropha Genome Database

JcCB0433251.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0433251.20 - phase: 0 
         (122 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01008841001 assembled CDS                                       216   2e-57

>GSVIVT01008841001 assembled CDS
          Length = 360

 Score =  216 bits (550), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 98/111 (88%), Positives = 107/111 (96%)

Query: 1   MQSTHMASEQITEEAVYLCTGNPLPRDIEQISYWLLNESFAETLKRISEIKTKKGLALVD 60
           +QSTHMAS+QITEEAVYLCTGNPLP+DIEQISYWLLNESFA +  RISE+K +KGLALVD
Sbjct: 239 LQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFAASFDRISEVKMRKGLALVD 298

Query: 61  IVREVTMFVFKIKMPSDVRVQLINDMADIEYRLSFGCNDKLQLGSLISSFT 111
           +VREVTMFVFKIKMPSDVRVQLIND+ADIEYRLSFGCNDKLQLGSLI+SFT
Sbjct: 299 VVREVTMFVFKIKMPSDVRVQLINDLADIEYRLSFGCNDKLQLGSLIASFT 349