Jatropha Genome Database

JcCB0433251.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0433251.10 + phase: 0 /partial
         (50 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01008840001 assembled CDS                                        89   3e-19
GSVIVT01022187001 assembled CDS                                        50   2e-07

>GSVIVT01008840001 assembled CDS
          Length = 2026

 Score = 89.4 bits (220), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 41/49 (83%), Positives = 46/49 (93%)

Query: 1    STLGKVTIQIDKVVTEGVYNGLFSLNHESNKDGSSRTLEIEISWTNRTS 49
            + LG+VTIQIDKVVTEGVY+GLFSLNH+SNKDGSSRTLEIEI W+NR S
Sbjct: 1974 TNLGRVTIQIDKVVTEGVYSGLFSLNHDSNKDGSSRTLEIEIIWSNRIS 2022


>GSVIVT01022187001 assembled CDS
          Length = 2065

 Score = 50.1 bits (118), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/47 (55%), Positives = 32/47 (68%), Gaps = 1/47 (2%)

Query: 1    STLGKVTIQIDKVVTEGVYNGLFSLNHESNKDGSSRTLEIEISWTNR 47
            S+ GKVTIQID+VV  G   G ++L  ES K G SR LEIE  W+N+
Sbjct: 2020 SSFGKVTIQIDRVVMLGTVAGEYTLLPES-KSGPSRNLEIEFQWSNK 2065