Jatropha Genome Database

JcCB0432541.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0432541.10 + phase: 0 /pseudo/partial
         (163 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01025279001 assembled CDS                                        87   4e-18
GSVIVT01001926001 assembled CDS                                        86   8e-18

>GSVIVT01025279001 assembled CDS
          Length = 979

 Score = 87.0 bits (214), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 40/47 (85%), Positives = 43/47 (91%)

Query: 117 ELGESRIILCEPGARHRLQKLQLNFPSDDVAFALKGSQELPWLAKYL 163
           +LGE RIILCE GA+HRLQKLQLNFPSDDVAFALK  +ELPWLAKYL
Sbjct: 933 KLGECRIILCEAGAKHRLQKLQLNFPSDDVAFALKDDKELPWLAKYL 979


>GSVIVT01001926001 assembled CDS
          Length = 87

 Score = 85.9 bits (211), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 40/47 (85%), Positives = 42/47 (89%)

Query: 117 ELGESRIILCEPGARHRLQKLQLNFPSDDVAFALKGSQELPWLAKYL 163
           +LGE RIILCE GA HRLQKLQLNFPSDDVAFALK  +ELPWLAKYL
Sbjct: 41  KLGECRIILCEAGATHRLQKLQLNFPSDDVAFALKDDKELPWLAKYL 87