Jatropha Genome Database

JcCB0432331.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0432331.10 + phase: 0 /partial
         (110 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01000716001 assembled CDS                                       168   4e-43

>GSVIVT01000716001 assembled CDS
          Length = 273

 Score =  168 bits (426), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 91/116 (78%), Positives = 94/116 (81%), Gaps = 14/116 (12%)

Query: 9   VLLTTPTTPKGRMKAIVKASEGFVYLVSSVGVTGARAS--------------ETTKPVAV 54
           VLLTTPTTP  RMKAIV ASEGFVYLVSSVGVTGARAS               T+KPVAV
Sbjct: 158 VLLTTPTTPIDRMKAIVAASEGFVYLVSSVGVTGARASVSSRVQTLLQEIKQATSKPVAV 217

Query: 55  GFGISKPEHVKQVAGWGADGVIVGSAIVKVLGDAKSPEEGLKELENLTKSLKSALL 110
           GFGISKPEHVKQV  WGADGVIVGSA+VKVLG+AKSPEEGLKELE  TKSLKSALL
Sbjct: 218 GFGISKPEHVKQVVAWGADGVIVGSAMVKVLGEAKSPEEGLKELETFTKSLKSALL 273