Jatropha Genome Database

JcCB0432281.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0432281.10 - phase: 0 /pseudo
         (149 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01014748001 assembled CDS                                       187   2e-48

>GSVIVT01014748001 assembled CDS
          Length = 210

 Score =  187 bits (475), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 85/129 (65%), Positives = 108/129 (83%)

Query: 2   EFYGKFVSLSVKRFPRRVLLKSIGFNSILLRVSPVFAAPVPDMKEPQVVRTLKLDSGVRI 61
           + +GKF SL+  R PRR+ L+ +G+N +L    PV AAP+ +M EP+V+RT KL +GVR 
Sbjct: 34  KLHGKFPSLTDTRVPRRLFLQFMGYNHLLSYACPVLAAPMLEMTEPEVIRTQKLANGVRF 93

Query: 62  QEIIEGEGSEAHEGDVVEINYVCRRSNGYFVHSTVDQFSGESSPVILPLDENRIIKGLKD 121
           Q+++EG+G EA EGD+VE+NYVCRRSNGYFVHSTVDQFSGES PV+LPLDEN+IIKGLKD
Sbjct: 94  QDVVEGDGPEAQEGDLVEVNYVCRRSNGYFVHSTVDQFSGESMPVVLPLDENQIIKGLKD 153

Query: 122 VLIGMKIGG 130
           VL+GMK+GG
Sbjct: 154 VLVGMKVGG 162