Jatropha Genome Database

JcCB0432121.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0432121.10 - phase: 2 /partial
         (185 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01004724001 assembled CDS                                       265   7e-72
GSVIVT01029732001 assembled CDS                                        55   1e-08

>GSVIVT01004724001 assembled CDS
          Length = 427

 Score =  265 bits (678), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 129/184 (70%), Positives = 150/184 (81%), Gaps = 13/184 (7%)

Query: 1   IDCSPKKGLYYCVIYLRPGDYHRIHSPVEWNVLVRRHFTGWVGNLFPMNERATRTIRNLY 60
           +  SP KGL+YCVIYL+PGDYHRIHSP++WNVLVRRHF+G    LFP+NERATRTIRNLY
Sbjct: 256 VASSPMKGLFYCVIYLKPGDYHRIHSPIDWNVLVRRHFSG---RLFPVNERATRTIRNLY 312

Query: 61  VENERVVLEGLWQEGFMAIAAIGATNIGSIELFIEPELCTNLPRKKLLNSQPPEERVYEP 120
           +ENERVVLEG WQEGFM +  +         LFIEPEL TN PRKK  +S+PPEER+YEP
Sbjct: 313 LENERVVLEGQWQEGFMELLQL---------LFIEPELRTNRPRKKFFHSEPPEERIYEP 363

Query: 121 EGIGKMLKKGEEVAAFNMGSTVVLVFQAPTLKLLKNRDSSSEFRFNIKRGDRVRVGEALG 180
           EG+G MLKKG+E+AAFNMGSTVVLVFQAP  +  KN+  SSEF F  ++GDR+RVGEALG
Sbjct: 364 EGVGVMLKKGDEMAAFNMGSTVVLVFQAPVSRSPKNQ-GSSEFSFCTRKGDRIRVGEALG 422

Query: 181 RWHD 184
           RWHD
Sbjct: 423 RWHD 426


>GSVIVT01029732001 assembled CDS
          Length = 283

 Score = 55.5 bits (132), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/157 (31%), Positives = 70/157 (44%), Gaps = 37/157 (23%)

Query: 13  VIYLRPGDYHRIHSPVEWNVLVRRHFTGWVGNLFPMNERATRT-IRNLYVENERVV-LEG 70
           +  L P DYHR H PV   +     F    G L+ +N  A  +   N++ EN+RVV +  
Sbjct: 102 IFRLAPQDYHRFHFPVSGTI---ECFVDIPGCLYTVNPIAVNSKYCNVFTENKRVVSVIS 158

Query: 71  LWQEGFMAIAAIGATNIGSIELFIEPELCTNLPRKKLLNSQPPEERVYEPEGIGKMLKKG 130
               G +A  AIGAT +GSI             +KK                 G  ++KG
Sbjct: 159 TSDFGKVAFVAIGATMVGSI----------TFTKKK-----------------GDYVQKG 191

Query: 131 EEVAAFNM-GSTVVLVFQAPTLK----LLKNRDSSSE 162
           EE   F+  GSTV+ VF+  T++    LL+N   S E
Sbjct: 192 EEFGYFSFGGSTVICVFEKDTIEIDEDLLENSTKSLE 228