Jatropha Genome Database

JcCB0432051.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0432051.10 - phase: 0 /partial
         (170 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01021618001 assembled CDS                                        77   3e-15

>GSVIVT01021618001 assembled CDS
          Length = 519

 Score = 77.4 bits (189), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 62/149 (41%), Positives = 72/149 (48%), Gaps = 3/149 (2%)

Query: 22  FNEDPFFSKESKKRRKM-DYNDDYIESGESEEENGFLSGGXXXXXXXXXXXXXXXXXTAD 80
            +ED FF  ESK+RRK  D + +       EE++   +G                  TAD
Sbjct: 24  IDEDSFFRHESKRRRKAKDEDAEDDIIESEEEDDEEGTGSDADGLEERQEEDEFAAETAD 83

Query: 81  EKRQRVAKAYVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRVLKKLMQAQLEESGRLR 140
           EKR RVAKAYV                              S V + L Q QLEESGR+R
Sbjct: 84  EKRLRVAKAYVEKIRGIVSREREDEEESERAEEREGQRD--SLVAQILQQEQLEESGRVR 141

Query: 141 RAIASRVEKPETVGGFEVLVKHRHSVTAV 169
           R IASRV+KPETV  F VLVKHR SVTAV
Sbjct: 142 RLIASRVQKPETVDEFRVLVKHRQSVTAV 170