Jatropha Genome Database

JcCB0431651.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0431651.10 - phase: 0 /partial
         (341 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01015328001 assembled CDS                                       556   e-159
GSVIVT01018220001 assembled CDS                                       474   e-134

>GSVIVT01015328001 assembled CDS
          Length = 536

 Score =  556 bits (1434), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 273/338 (80%), Positives = 304/338 (89%), Gaps = 3/338 (0%)

Query: 1   DDIGWVQRTPRMAPVEDGTARFLDLLNKIRNGEHKLQDSFVYLLIPGLFSNHGPLYFVGT 60
           DDIGW+Q TP +APVEDGTARFL+LL +IRNG+H L +S+VYLLIPGLF NHGPLYFV T
Sbjct: 198 DDIGWLQCTPGVAPVEDGTARFLELLREIRNGKHTLPNSYVYLLIPGLFGNHGPLYFVNT 257

Query: 61  KRCFSKMGLACHIAKIHSEASVEHNACELKHYIEELYWGSGKRVMLLGHSKGGVDAAAAL 120
           K+ FSKMGLACHIAKIHSEASVEHNA ELK YIEELYWGSGK V+LLGHSKGGVDAAAAL
Sbjct: 258 KKFFSKMGLACHIAKIHSEASVEHNAWELKQYIEELYWGSGKCVILLGHSKGGVDAAAAL 317

Query: 121 SLYWSDLKDKVAGLALVQSPYGGSPVASDILREGQIADKETRKIMELLICKFIKGDIRAL 180
           S+YWSDLKDKVAGLALVQSPYGG+P+ASDILREGQIAD+ETR+I+E LICK IKGDI+AL
Sbjct: 318 SMYWSDLKDKVAGLALVQSPYGGTPLASDILREGQIADRETRRILEFLICKLIKGDIQAL 377

Query: 181 EDLTYDKRREFIMNHKLPEQIPLISFHSEASIAPGVIATMTQIAHAELPWLPLPKLGFEE 240
           EDLTY+KRREFIMNHKLPE IPLISFHSEAS+AP V+ATM+ +AHAELP LPLP+ G +E
Sbjct: 378 EDLTYEKRREFIMNHKLPECIPLISFHSEASVAPSVLATMSHVAHAELPLLPLPRFGSKE 437

Query: 241 PDSVVQAGRKVPVVIPLSAAMAVSALHLQLRYGEKSDGLVTCRDAEVPGSVVVRPDRKLD 300
            D  VQ G KVPVVIP+SA +++ ALHLQLRYGEKSDGLVTCRDAEVPGSVVV+PD KLD
Sbjct: 438 SD--VQ-GCKVPVVIPISAVLSLCALHLQLRYGEKSDGLVTCRDAEVPGSVVVKPDLKLD 494

Query: 301 HAWMVYSSGKKDPNEPDCSEMCEALLTMLVELGMIKEE 338
           HAWMVY SGKKD +EPD  EM EALLT+LVELG  K+E
Sbjct: 495 HAWMVYFSGKKDLSEPDACEMSEALLTLLVELGKTKKE 532


>GSVIVT01018220001 assembled CDS
          Length = 552

 Score =  474 bits (1220), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 228/336 (67%), Positives = 276/336 (82%), Gaps = 14/336 (4%)

Query: 1   DDIGWVQRTPRMAPVEDGTARFLDLLNKIRNGEHKLQDSFVYLLIPGLFSNHGPLYFVGT 60
           DDIGW+QR P M PVEDGT RF++++++IR+G H+L +S +YLL+PGLFSNHGPLYFV T
Sbjct: 216 DDIGWIQRAPGMPPVEDGTDRFMEIIDEIRHGVHRLPNSMIYLLVPGLFSNHGPLYFVNT 275

Query: 61  KRCFSKMGLACHIAKIHSEASVEHNACELKHYIEELYWGSGKRVMLLGHSKGGVDAAAAL 120
           K  FSKMGLACHIAKIHSEASVE NA E+K YIEE+YWGS KRV+LLGHSKGGVDAAAAL
Sbjct: 276 KISFSKMGLACHIAKIHSEASVEKNAREIKEYIEEIYWGSQKRVLLLGHSKGGVDAAAAL 335

Query: 121 SLYWSDLKDKVAGLALVQSPYGGSPVASDILREGQIADK-ETRKIMELLICKFIKGDIRA 179
           S+YWSDLKDKVAGL L QSPYGGSP+ASDILREGQ+ D    RK+ME+LICK IKGDI+A
Sbjct: 336 SMYWSDLKDKVAGLVLAQSPYGGSPIASDILREGQLGDYVNLRKLMEILICKVIKGDIQA 395

Query: 180 LEDLTYDKRREFIMNHKLPEQIPLISFHSEASIAPGVIATMTQIAHAELPWLPLPKLGFE 239
           LEDLTY+KR+EF+  H LP  +P++SF +EA I+P V+AT++++AHAE+P +        
Sbjct: 396 LEDLTYEKRKEFLRKHHLPPALPVVSFITEAGISPAVVATLSRVAHAEVPIV-------- 447

Query: 240 EPDSVVQAGR--KVPVVIPLSAAMAVSALHLQLRYGEKSDGLVTCRDAEVPGSVVVRPDR 297
              + + AG+  KVPV+IPL AAMA  A  LQ+RYGEKSDGLVTCRDA+VPGS+VVRP R
Sbjct: 448 ---APLTAGQPAKVPVIIPLGAAMAACAQLLQIRYGEKSDGLVTCRDAQVPGSIVVRPKR 504

Query: 298 KLDHAWMVYSSGKKDPNEPDCSEMCEALLTMLVELG 333
           KLDHAWMVYS+   DP E + S++CEALL +LVE G
Sbjct: 505 KLDHAWMVYSALDDDPTEANASQVCEALLRLLVEAG 540