Jatropha Genome Database

JcCB0431461.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0431461.10 - phase: 2 /pseudo/partial
         (125 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01017960001 assembled CDS                                        70   4e-13

>GSVIVT01017960001 assembled CDS
          Length = 574

 Score = 69.7 bits (169), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 30/34 (88%), Positives = 33/34 (97%)

Query: 92  FNMKRLIGRVDTDPVVHASKSLPFLVQTLDIGVR 125
           FNMKRLIGRVDTDPVVHASKSLPFLV T++IG+R
Sbjct: 92  FNMKRLIGRVDTDPVVHASKSLPFLVHTMNIGIR 125