Jatropha Genome Database

JcCB0431061.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0431061.10 + phase: 0 
         (296 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01012238001 assembled CDS                                       400   e-112

>GSVIVT01012238001 assembled CDS
          Length = 482

 Score =  400 bits (1027), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 194/296 (65%), Positives = 227/296 (76%), Gaps = 29/296 (9%)

Query: 1   MSLFKRLIPTKQGLGDAINHLRGPSFCLFHSASDSNMELHSQDQEVVIALGSNVGQRLHN 60
           M++FK+L  T+ G    +   R     L HS+S +++E+HSQDQEVVIALGSNVG R+ N
Sbjct: 1   MNIFKQLASTRCGFNGGMKSCRATCVSLLHSSSGTSVEVHSQDQEVVIALGSNVGNRVDN 60

Query: 61  FNKALQMMKQSGINITRHGCLYETAPAYVTDQPHFLNSAVRAVTKHGPHELLEVLKKIEK 120
           FN+ALQ+MK+SG++ITRHGCLYET P YVTDQP FLNSAVR +TK GPHELL VLKKIEK
Sbjct: 61  FNEALQLMKKSGMHITRHGCLYETEPVYVTDQPLFLNSAVRGITKLGPHELLRVLKKIEK 120

Query: 121 DIGRTAGIRYGPRPIDLDILFYGKFRIDSATLTVPHERIWERPFVMAPLVDLLGSDIEND 180
           D+GRT GIRYGPRPIDLDILFYGKFR++S  LT+PHERIWERPFVMAPL+D++GS +E+D
Sbjct: 121 DMGRTDGIRYGPRPIDLDILFYGKFRVNSEILTIPHERIWERPFVMAPLMDVMGSAMESD 180

Query: 181 TVACWHSLSRHSGGLFESWEKLGGEHLIGKEGLKRVIPIGNHLWDWSQKTSVMGIINLTP 240
           T                              GLKRV+P GN LWDWS KTS+MGI+NLTP
Sbjct: 181 T-----------------------------NGLKRVLPTGNVLWDWSLKTSMMGILNLTP 211

Query: 241 DSFSDGGKFQCVDSVVSQVHLMLSEGVDIIDFGAQSTRPMASRLSPQEELDRLMPV 296
           DSFSDGGKFQ V++ VSQV LM+ EG DIID GAQSTRPMASRLS QEELDRL+PV
Sbjct: 212 DSFSDGGKFQSVEAAVSQVRLMILEGADIIDIGAQSTRPMASRLSAQEELDRLIPV 267