Jatropha Genome Database
- JcCB0430801.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0430801.10 + phase: 2 /pseudo/partial
(195 letters)
Database: grape_pep_20100319
26,346 sequences; 9,959,944 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
GSVIVT01025526001 assembled CDS 218 1e-57
GSVIVT01031451001 assembled CDS 147 2e-36
GSVIVT01033711001 assembled CDS 134 2e-32
GSVIVT01031452001 assembled CDS 129 9e-31
GSVIVT01014219001 assembled CDS 82 1e-16
GSVIVT01017972001 assembled CDS 78 3e-15
GSVIVT01001168001 assembled CDS 74 3e-14
GSVIVT01024716001 assembled CDS 66 9e-12
GSVIVT01024715001 assembled CDS 63 9e-11
GSVIVT01012117001 assembled CDS 60 6e-10
GSVIVT01038589001 assembled CDS 49 2e-06
GSVIVT01025216001 assembled CDS 48 3e-06
GSVIVT01035901001 assembled CDS 47 4e-06
>GSVIVT01025526001 assembled CDS
Length = 841
Score = 218 bits (556), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 103/142 (72%), Positives = 115/142 (80%), Gaps = 1/142 (0%)
Query: 55 GYKQGNGIVCSCCDREISPSQFEAHAGMAARRQPYRHIYTSNGLTLHDIAISLANGQNVT 114
GYKQGNGIVCS CD E+SPSQFEAHAG AARRQPYRHIYTSNGLTLHDIAISLANGQN T
Sbjct: 433 GYKQGNGIVCSHCDSEVSPSQFEAHAGWAARRQPYRHIYTSNGLTLHDIAISLANGQNCT 492
Query: 115 SGVSDDMCAKCGDGGGLIFCESCPRAFHLECLDLQCVPKGVWQCPSCIKSG-HGGNFTRP 173
+G SDDMC CGDGG LI C+ CPRAFH CL+LQC+P+G W+CP C+++ RP
Sbjct: 493 TGDSDDMCTLCGDGGDLILCDGCPRAFHPACLELQCLPEGDWRCPCCVENFCPDRKVARP 552
Query: 174 IIIRLTRVVKMPEYEVGGCAVC 195
I I+LTR VK PE E+GGC VC
Sbjct: 553 IRIQLTRAVKAPESEIGGCVVC 574
>GSVIVT01031451001 assembled CDS
Length = 824
Score = 147 bits (372), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 73/159 (45%), Positives = 101/159 (63%), Gaps = 18/159 (11%)
Query: 55 GYKQGNGIVCSCCDREISPSQFEAHAGMAARRQPYRHIYTSNGLTLHDIAISLANGQNVT 114
GYK+G+GI C+CC+ E+SPSQFEAHAG A+RR+PY HIYTSNG++LH+ +ISL+ G+ ++
Sbjct: 401 GYKRGSGIFCTCCNSEVSPSQFEAHAGWASRRKPYLHIYTSNGVSLHEFSISLSRGREIS 460
Query: 115 SGVSDDMCAKCGDGGGLIFCESCPRAFHLECLDLQCVPKGVWQCPSC------------- 161
+DD+C+ C DGG L+ C+ CPR FH EC+ L +PKG W C C
Sbjct: 461 VSDNDDLCSICLDGGNLLCCDGCPRVFHKECVSLANIPKGKWFCKFCNNMLQKEKFVEHN 520
Query: 162 ---IKSGH--GGNFTRPIIIRLTRVVKMPEYEVGGCAVC 195
+ +G G + I R R+V E+GGCA+C
Sbjct: 521 ANAVAAGRVAGVDPIEQITKRCIRIVNTQVDEMGGCALC 559
>GSVIVT01033711001 assembled CDS
Length = 879
Score = 134 bits (338), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 70/160 (43%), Positives = 96/160 (60%), Gaps = 19/160 (11%)
Query: 54 SGYKQGNGIVCSCCDREISPSQFEAHAGMAARRQPYRHIYTSNGLTLHDIAISLANGQNV 113
GYK+G GI C CC E+S SQFEAHAG A+R++PY +IYTSNG++LH++AISL+ G+
Sbjct: 447 DGYKKGFGIFCWCCHCEVSASQFEAHAGWASRKKPYSYIYTSNGVSLHELAISLSKGRKY 506
Query: 114 TSGVSDDMCAKCGDGGGLIFCESCPRAFHLECLDLQCVPKGVWQCPSC------------ 161
++ +DD+C+ CGDGG L+ C+ CPRAFH C L +P+ W C C
Sbjct: 507 SARDNDDLCSICGDGGNLLLCDGCPRAFHRVCASLPSIPQDDWYCRYCQNMFQREKFVEH 566
Query: 162 ----IKSGH--GGNFTRPIIIRLTRVVKMPEYEVGGCAVC 195
+ +G G + I R R+V PE EV C +C
Sbjct: 567 NANAVAAGRVSGVDPIEQITKRCIRIVN-PEAEVSACVLC 605
>GSVIVT01031452001 assembled CDS
Length = 772
Score = 129 bits (324), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 70/160 (43%), Positives = 99/160 (61%), Gaps = 18/160 (11%)
Query: 54 SGYKQGNGIVCSCCDREISPSQFEAHAGMAARRQPYRHIYTSNGLTLHDIAISLANGQNV 113
SG+K+G I+C CC+ E+SPSQFEAH+G A+RR+PY HIYTSNG++LH++++SL G+
Sbjct: 487 SGHKKGCRILCGCCNSEVSPSQFEAHSGWASRRKPYLHIYTSNGVSLHELSLSLLRGREP 546
Query: 114 TSGVSDDMCAKCGDGGGLIFCESCPRAFHLECLDLQCVPKGVWQCPSCIKSGHGGNFT-- 171
+ +D++C+ C DGG L+ C+ CPR FH EC+ L+ +PKG W C C+ + G F
Sbjct: 547 SINTNDEICSICLDGGTLLCCDGCPRVFHKECVSLENIPKGKWFCKFCLNTLQKGKFVER 606
Query: 172 ----------------RPIIIRLTRVVKMPEYEVGGCAVC 195
I R R+VK E GGCA+C
Sbjct: 607 NANAVAAGRMGGVDPIEQIRKRCIRIVKNQTDEAGGCALC 646
>GSVIVT01014219001 assembled CDS
Length = 1300
Score = 82.4 bits (202), Expect = 1e-16, Method: Composition-based stats.
Identities = 44/119 (36%), Positives = 59/119 (49%), Gaps = 13/119 (10%)
Query: 55 GYKQGNGIVCSCCDREISPSQFEAHAGMAARRQPYRHIYTSNG--LTLHDIAI------- 105
GY +GIVC CC S F+ HAG R P R+++ +G TL +
Sbjct: 795 GYVTRDGIVCKCCTELFSVCNFKIHAGFKLNR-PCRNLFMESGKSFTLCQLQAWSTEYKV 853
Query: 106 ---SLANGQNVTSGVSDDMCAKCGDGGGLIFCESCPRAFHLECLDLQCVPKGVWQCPSC 161
+ N Q +DD C CGDGG LI C++CP FH CL + +P+G W CP+C
Sbjct: 854 RKGGIKNVQIDEIDQNDDSCGLCGDGGELICCDNCPSTFHQACLSAKELPEGNWYCPNC 912
>GSVIVT01017972001 assembled CDS
Length = 1264
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 65/119 (54%), Gaps = 13/119 (10%)
Query: 55 GYKQGNGIVCSCCDREISPSQFEAHAGMAARRQPYRHIYTSNGLTLHDIAISLANGQNVT 114
G+ +GI C CC + ++ S+FE HAG + RQP+++I +G++L + N Q +
Sbjct: 424 GWITRDGIHCRCCSKILTVSKFEIHAG-SKLRQPFQNIVLDSGVSLLQCQVDAWNRQEES 482
Query: 115 S------------GVSDDMCAKCGDGGGLIFCESCPRAFHLECLDLQCVPKGVWQCPSC 161
+DD C CGDGG LI C+ CP FH CL++Q +P G W CP+C
Sbjct: 483 ERSGFHPIDVDGDDPNDDTCGICGDGGDLICCDGCPSTFHQSCLNIQMLPSGDWHCPNC 541
>GSVIVT01001168001 assembled CDS
Length = 912
Score = 74.3 bits (181), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 57/120 (47%), Gaps = 13/120 (10%)
Query: 54 SGYKQGNGIVCSCCDREISPSQFEAHAGMAARRQPYRHIYTSNGLTLHDIAISLANGQNV 113
G+ +GI C CC + S+FE HAGM +P ++I G++L + N Q
Sbjct: 173 EGWISRDGIRCGCCSEIFTISKFEIHAGMKLC-EPSQNIILETGISLLQCQLDSWNKQEE 231
Query: 114 T------------SGVSDDMCAKCGDGGGLIFCESCPRAFHLECLDLQCVPKGVWQCPSC 161
+ +DD C CGDGG LI C+ CP FH CLD+Q P G W C C
Sbjct: 232 SERSGFHLVDVGADDPNDDTCGICGDGGDLICCDGCPSTFHQSCLDIQKFPSGDWHCIYC 291
>GSVIVT01024716001 assembled CDS
Length = 687
Score = 66.2 bits (160), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 53/116 (45%), Gaps = 14/116 (12%)
Query: 60 NGIVCSCCDREISPSQFEAHAGMAARRQPYRHIYTSNGLTL--HDIAISLANGQNVTSGV 117
+GI SCC SP FEAHAG + + G L + G++ T
Sbjct: 278 DGIKNSCCQEVFSPRGFEAHAGSSFHQSDANIFLEDEGSLLEGQRQMVHRITGKSFTKES 337
Query: 118 S------------DDMCAKCGDGGGLIFCESCPRAFHLECLDLQCVPKGVWQCPSC 161
S DD+C+ C GG L+ C+ CP FH CL L+ +P+G W CPSC
Sbjct: 338 SHGKKSNGDQCNNDDICSVCHYGGDLVLCDQCPSCFHQSCLGLKELPEGDWFCPSC 393
>GSVIVT01024715001 assembled CDS
Length = 994
Score = 62.8 bits (151), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 56/117 (47%), Gaps = 16/117 (13%)
Query: 60 NGIVCSCCDREISPSQFEAHAGMAARRQPYRHIYTSNGLTLHDIAISLANG--------- 110
+GI CSCC S S+FEAHAG + R +I+ +G +L + + +
Sbjct: 593 DGIKCSCCQEVFSLSRFEAHAGSSYHRSAA-NIFLEDGRSLLECQMQIIRDITGKGFTKE 651
Query: 111 ------QNVTSGVSDDMCAKCGDGGGLIFCESCPRAFHLECLDLQCVPKGVWQCPSC 161
N +D +C+ C GG L+ C+ CP +FH CL L+ G W CPSC
Sbjct: 652 SFSRKKSNERHHENDHICSVCHYGGDLVLCDHCPSSFHKSCLGLKVGCFGDWFCPSC 708
>GSVIVT01012117001 assembled CDS
Length = 1638
Score = 60.1 bits (144), Expect = 6e-10, Method: Composition-based stats.
Identities = 23/45 (51%), Positives = 30/45 (66%), Gaps = 2/45 (4%)
Query: 122 CAKCGDGGGLIFCESCPRAFHLECLD--LQCVPKGVWQCPSCIKS 164
C C GG L+ C+SCPR +HL+CL+ L+ +P G WQCP C S
Sbjct: 78 CVICDLGGNLLCCDSCPRTYHLQCLNPPLKRIPNGKWQCPKCFCS 122
>GSVIVT01038589001 assembled CDS
Length = 400
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 34/61 (55%), Gaps = 6/61 (9%)
Query: 106 SLANGQNVTSGVSDDMCAKCGDGGG---LIFCESCPRAFHLECLD--LQCVPKGVWQCPS 160
SL+ Q + SD +C +CG G L+ C+ C R FHL CL + VPKG W CPS
Sbjct: 73 SLSKSQ-IDDYYSDAVCEECGSGDAADELLLCDKCDRGFHLFCLRPIIVSVPKGPWFCPS 131
Query: 161 C 161
C
Sbjct: 132 C 132
>GSVIVT01025216001 assembled CDS
Length = 1452
Score = 47.8 bits (112), Expect = 3e-06, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Query: 115 SGVSDDMCAKCGDGGGLIFCES--CPRAFHLECLD--LQCVPKGVWQCPSCIK 163
+G + C C GG L+ C+ C R++HL CLD L +P G+W C C+K
Sbjct: 440 TGDDHNTCVVCKLGGKLLCCDGKGCKRSYHLACLDPPLGEIPPGIWHCMLCVK 492
>GSVIVT01035901001 assembled CDS
Length = 1356
Score = 47.4 bits (111), Expect = 4e-06, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 113 VTSGVSDDMCAKCGDGGGLIFCESCPRAFHLECLDLQCVPKGV--WQCPSCI 162
V S DD C CG+ G L+ CE+C A+H +CL W+CP C+
Sbjct: 45 VRSDAKDDSCQACGESGNLLSCETCTYAYHPKCLLPPLKAPLPSNWRCPQCV 96