Jatropha Genome Database

JcCB0430531.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0430531.10 - phase: 0 /pseudo/partial
         (155 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01008164001 assembled CDS                                       164   1e-41
GSVIVT01036533001 assembled CDS                                       117   2e-27
GSVIVT01010100001 assembled CDS                                       101   1e-22

>GSVIVT01008164001 assembled CDS
          Length = 565

 Score =  164 bits (415), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 96/164 (58%), Positives = 115/164 (70%), Gaps = 28/164 (17%)

Query: 1   MIKSAKG-STQDDNLDDEEEFVLKKESSSPVHKGELRVKVDGKSTDQKANTPRSKHSATE 59
           MI+SA    TQ++  +DEEEFVLKKESSS  +KG+L VKVDGKS+DQKA TPRSKHSATE
Sbjct: 208 MIQSASAKGTQEEEEEDEEEFVLKKESSS--NKGDLTVKVDGKSSDQKAVTPRSKHSATE 265

Query: 60  QRRRSKINDSLLEVKEXXXXXXXXXXEYNYSVISECWRH--------LHILQVIEYIQFL 111
           QRRRSKIND  +                 + ++ +   H          +L+VIEYIQFL
Sbjct: 266 QRRRSKINDRRV-----------------FQMLRDLIPHSDQKRDKASFLLEVIEYIQFL 308

Query: 112 QEKVQKYEGSYQGWNHEPAKLVPWRNGNRPTESYADQSQGINGG 155
           QEKV KYEGS+QGWNHE AKL+PWRN +RP ES+ADQS+GIN G
Sbjct: 309 QEKVHKYEGSFQGWNHESAKLMPWRNSHRPAESFADQSRGINSG 352


>GSVIVT01036533001 assembled CDS
          Length = 402

 Score =  117 bits (293), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 60/124 (48%), Positives = 79/124 (63%), Gaps = 12/124 (9%)

Query: 32  KGELRVKVDGKSTDQKANTPRSKHSATEQRRRSKINDSLLEVKEXXXXXXXXXXEYNYSV 91
           KG+L ++ DG+S DQK +  RSKHSATEQRRRSKIN+    +++          + ++  
Sbjct: 86  KGDLAMRADGRSVDQKVSAHRSKHSATEQRRRSKINERFQILRDLIPQNDQKRDKASF-- 143

Query: 92  ISECWRHLHILQVIEYIQFLQEKVQKYEGSYQGWNHEPAKLVPWRNGNRPTESYADQSQG 151
                    +L+VIEYIQFLQEK+  YEGSYQGW+ EP KL+PWRN   P E++ D SQ 
Sbjct: 144 ---------LLEVIEYIQFLQEKLNMYEGSYQGWSQEPTKLMPWRNRG-PVENFMDHSQV 193

Query: 152 INGG 155
           I  G
Sbjct: 194 IKNG 197


>GSVIVT01010100001 assembled CDS
          Length = 328

 Score =  101 bits (252), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 56/119 (47%), Positives = 71/119 (59%), Gaps = 12/119 (10%)

Query: 37  VKVDGKSTDQKANTPRSKHSATEQRRRSKINDSLLEVKEXXXXXXXXXXEYNYSVISECW 96
            K DGK+ D KAN  RSKHS TEQRRRSKIN+    +++            ++       
Sbjct: 28  TKKDGKNHD-KANAMRSKHSVTEQRRRSKINERFQILRDLIPHSDQKRDTASF------- 79

Query: 97  RHLHILQVIEYIQFLQEKVQKYEGSYQGWNHEPAKLVPWRNGNRPTESYADQSQGINGG 155
               +L+VIEY+Q+LQEKVQKYEGSYQG   EP KL+PWRN +   +S+    Q IN G
Sbjct: 80  ----LLEVIEYVQYLQEKVQKYEGSYQGLTPEPTKLMPWRNSHWRVQSFVGHPQAINNG 134