Jatropha Genome Database
- JcCB0430471.20
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0430471.20 - phase: 0
(101 letters)
Database: grape_pep_20100319
26,346 sequences; 9,959,944 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
GSVIVT01003701001 assembled CDS 89 4e-19
GSVIVT01002668001 assembled CDS 89 4e-19
GSVIVT01036959001 assembled CDS 89 6e-19
GSVIVT01003697001 assembled CDS 86 3e-18
GSVIVT01003699001 assembled CDS 84 2e-17
GSVIVT01004409001 assembled CDS 80 2e-16
GSVIVT01003698001 assembled CDS 79 5e-16
GSVIVT01006476001 assembled CDS 61 1e-10
>GSVIVT01003701001 assembled CDS
Length = 186
Score = 89.0 bits (219), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 46/103 (44%), Positives = 66/103 (64%), Gaps = 7/103 (6%)
Query: 2 LEEQAKKKIVESALLVNRPQ-------PSVDEKFDNNLNHPLPEIEAKVLDQSVLVRIHC 54
LEEQ K+ VES + + + Q S DE FD + +IEA+V D++VL+RIHC
Sbjct: 62 LEEQMKETTVESVVFIKKSQLSADDETSSCDENFDGCREDAVRDIEARVSDKNVLIRIHC 121
Query: 55 EKNKGNLAKVLHELEKLPLIVVATNILPFGSCTMDLTVIGQVW 97
+K KG +AKVL E+E+ L VV +++LPFG MD+TV+ Q+
Sbjct: 122 KKQKGFVAKVLGEIEEHHLSVVNSSVLPFGKHAMDITVVAQMG 164
>GSVIVT01002668001 assembled CDS
Length = 177
Score = 89.0 bits (219), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 47/96 (48%), Positives = 66/96 (68%), Gaps = 1/96 (1%)
Query: 2 LEEQAKKKIVESALLVNRPQPSV-DEKFDNNLNHPLPEIEAKVLDQSVLVRIHCEKNKGN 60
LEEQ KK VES + V + + S D+ D+ + PLPEIEA+V ++ VL+RIHC K KG
Sbjct: 59 LEEQTTKKTVESVVSVKKSKLSDNDQNPDSFSDQPLPEIEARVSNKDVLIRIHCVKQKGF 118
Query: 61 LAKVLHELEKLPLIVVATNILPFGSCTMDLTVIGQV 96
++L E+EKL L VV +++LPFG MD+TV+ Q+
Sbjct: 119 AVRILGEIEKLRLRVVNSSVLPFGDYIMDITVVAQM 154
>GSVIVT01036959001 assembled CDS
Length = 344
Score = 88.6 bits (218), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 45/103 (43%), Positives = 68/103 (66%), Gaps = 8/103 (7%)
Query: 2 LEEQAKKKIVESALLVNRPQ-------PSVDEKFDNN-LNHPLPEIEAKVLDQSVLVRIH 53
LEEQ +KK ES + V + Q S DE F + L+ PLPEIEA+ D+SVL+RIH
Sbjct: 222 LEEQTRKKTTESVVFVKKSQVFLDGDNSSSDEDFSGSPLDEPLPEIEARFSDKSVLIRIH 281
Query: 54 CEKNKGNLAKVLHELEKLPLIVVATNILPFGSCTMDLTVIGQV 96
CEK KG + K++ E+E L L V+ ++++ FG+ +D+T+I ++
Sbjct: 282 CEKRKGVVEKLVAEVEGLHLTVINSSVMTFGNSALDVTIIAEM 324
>GSVIVT01003697001 assembled CDS
Length = 338
Score = 86.3 bits (212), Expect = 3e-18, Method: Composition-based stats.
Identities = 47/102 (46%), Positives = 66/102 (64%), Gaps = 6/102 (5%)
Query: 1 MLEEQAKKKIVESALLVNRPQPSVDEKF------DNNLNHPLPEIEAKVLDQSVLVRIHC 54
MLEEQ KK+VES + V + Q S DE D++ N PL EIEA+V ++ VL+RIHC
Sbjct: 214 MLEEQTTKKMVESVVTVKKYQLSDDETSLSYHDSDSSSNQPLLEIEARVSNKDVLIRIHC 273
Query: 55 EKNKGNLAKVLHELEKLPLIVVATNILPFGSCTMDLTVIGQV 96
+K KG K+L E+EKL L V+ ++ FG MD+T++ Q+
Sbjct: 274 QKEKGFAVKILGEVEKLHLTVINSSFTAFGDYIMDITIVAQM 315
>GSVIVT01003699001 assembled CDS
Length = 126
Score = 83.6 bits (205), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/103 (45%), Positives = 65/103 (63%), Gaps = 7/103 (6%)
Query: 1 MLEEQAKKKIVESALLVNRPQPSVDEKFDNNL------NHPLPEIEAKVLDQSVLVRIHC 54
MLEEQ KK+VESA+ V R Q S +E + N EIEA+V ++ VL+RIHC
Sbjct: 1 MLEEQTAKKMVESAVTVKRYQLSDNETSSSYHNSDSSSNQLFLEIEARVSNKDVLIRIHC 60
Query: 55 EKNKGNLAKVLHELEKLPLIVVATNILPFGSCT-MDLTVIGQV 96
+K KG K+L E+EKL L V+ ++ LPFG MD+T++ Q+
Sbjct: 61 QKEKGFAVKILGEIEKLHLTVIKSSFLPFGEYNIMDITIVAQM 103
>GSVIVT01004409001 assembled CDS
Length = 334
Score = 80.5 bits (197), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/102 (44%), Positives = 63/102 (61%), Gaps = 6/102 (5%)
Query: 1 MLEEQAKKKIVESALLVNRPQ------PSVDEKFDNNLNHPLPEIEAKVLDQSVLVRIHC 54
MLE Q K +ES + V + Q S D+ D+ N L EIEA+V ++ VL+RIHC
Sbjct: 208 MLEVQTATKTMESVVSVKKSQLCDNDHSSSDQNSDSCSNQTLLEIEARVFNKDVLIRIHC 267
Query: 55 EKNKGNLAKVLHELEKLPLIVVATNILPFGSCTMDLTVIGQV 96
E+ KG K+L E+EKL L VV ++ LPFG+ M +TV+ Q+
Sbjct: 268 ERQKGFTVKILDEIEKLHLTVVNSSSLPFGNYIMVITVVAQM 309
>GSVIVT01003698001 assembled CDS
Length = 350
Score = 79.0 bits (193), Expect = 5e-16, Method: Composition-based stats.
Identities = 45/101 (44%), Positives = 61/101 (60%), Gaps = 6/101 (5%)
Query: 2 LEEQAKKKIVESALLVNRPQ------PSVDEKFDNNLNHPLPEIEAKVLDQSVLVRIHCE 55
LEEQ K +ES + V + Q S D+ D+ N L EIEA+V ++ VL+RIHCE
Sbjct: 225 LEEQTATKTMESVVFVKKSQLCDDELSSSDQNSDSCSNQTLLEIEARVSNKDVLIRIHCE 284
Query: 56 KNKGNLAKVLHELEKLPLIVVATNILPFGSCTMDLTVIGQV 96
+ KG AK+L E+EKL L VV + LPFG M TV+ ++
Sbjct: 285 RQKGFTAKILDEIEKLHLTVVHCSSLPFGDYIMVTTVVARM 325
>GSVIVT01006476001 assembled CDS
Length = 5164
Score = 60.8 bits (146), Expect = 1e-10, Method: Composition-based stats.
Identities = 28/56 (50%), Positives = 41/56 (73%)
Query: 41 AKVLDQSVLVRIHCEKNKGNLAKVLHELEKLPLIVVATNILPFGSCTMDLTVIGQV 96
A+V ++ VL+RIHC K KG ++L E+EKL L VV +++LPFG MD+TV+ Q+
Sbjct: 5086 ARVSNKDVLIRIHCVKQKGFAVRILGEIEKLRLRVVNSSVLPFGDYIMDITVVAQM 5141