Jatropha Genome Database

JcCB0430471.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0430471.10 + phase: 1 /partial
         (193 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01020427001 assembled CDS                                       156   5e-39
GSVIVT01020430001 assembled CDS                                       150   3e-37

>GSVIVT01020427001 assembled CDS
          Length = 842

 Score =  156 bits (395), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 79/153 (51%), Positives = 106/153 (69%)

Query: 40  LRALFQSGMLESDSETIKVPVSWEAMTKFVNWCYTDELPSPPSGCLWDNMDTEERLSVLQ 99
            RA+F+SGM ES S  IKVPVSWEA+ K V+W Y+D+LP+  +GCLWDNMD  ++L  LQ
Sbjct: 682 FRAMFRSGMQESRSPFIKVPVSWEALVKLVDWLYSDKLPTLVTGCLWDNMDERKKLQELQ 741

Query: 100 PYXXXXXXXXXXXXXDVQDISYRVIISYLDSARHLSIKIIKIAADLSLWKLVEVAAIYLA 159
           PY             D+Q+   RVI S LDS+ +LS++++ IAA LSLWKL E A   LA
Sbjct: 742 PYLELCWLADYWLLDDIQEHCSRVINSCLDSSGNLSLEVLHIAARLSLWKLAETAVNRLA 801

Query: 160 PLYRQLCHSGDLEALDEEVVDMIRAASVRLSQE 192
           P Y +LC +G++E LD+++ DM+ AASVR SQ+
Sbjct: 802 PSYSRLCLTGEIEKLDKDLADMVHAASVRHSQD 834


>GSVIVT01020430001 assembled CDS
          Length = 871

 Score =  150 bits (379), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 80/177 (45%), Positives = 115/177 (64%), Gaps = 7/177 (3%)

Query: 23  CRIC--IVTKLCCGQVVI-----ILRALFQSGMLESDSETIKVPVSWEAMTKFVNWCYTD 75
           C+ C  +V  +   +V++       RA+F+SGM ES S  IKVPVSWEA+ K V+W Y+D
Sbjct: 687 CKFCPVLVPHMHVHKVILWSSCDYFRAMFRSGMQESRSPFIKVPVSWEALVKLVDWLYSD 746

Query: 76  ELPSPPSGCLWDNMDTEERLSVLQPYXXXXXXXXXXXXXDVQDISYRVIISYLDSARHLS 135
           +LP+  +GCLWDNMD  ++L  LQPY             ++Q+   RVI S LDS+ +LS
Sbjct: 747 KLPTLVTGCLWDNMDERKKLQELQPYLELCWLADYWLLDNIQEHCSRVINSCLDSSGNLS 806

Query: 136 IKIIKIAADLSLWKLVEVAAIYLAPLYRQLCHSGDLEALDEEVVDMIRAASVRLSQE 192
           +++++IAA LSLWKL E A   L P Y +L  +G++E LD+++ DM+R ASVR SQ+
Sbjct: 807 LEVLQIAARLSLWKLAETAVNRLGPSYSRLRLTGEIEKLDKDLADMVRVASVRHSQD 863