Jatropha Genome Database

JcCB0430311.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0430311.10 - phase: 2 /partial
         (356 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01032376001 assembled CDS                                       568   e-162
GSVIVT01014838001 assembled CDS                                       532   e-151
GSVIVT01008517001 assembled CDS                                       502   e-143
GSVIVT01001805001 assembled CDS                                       294   5e-80
GSVIVT01008519001 assembled CDS                                       253   1e-67
GSVIVT01001806001 assembled CDS                                       224   4e-59
GSVIVT01008186001 assembled CDS                                        74   1e-13
GSVIVT01010166001 assembled CDS                                        71   8e-13
GSVIVT01011555001 assembled CDS                                        67   1e-11
GSVIVT01024410001 assembled CDS                                        65   4e-11
GSVIVT01001804001 assembled CDS                                        62   4e-10

>GSVIVT01032376001 assembled CDS
          Length = 448

 Score =  568 bits (1464), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 271/346 (78%), Positives = 304/346 (87%)

Query: 11  SPLHPPKQPFVIGVAGGTASGKTTVCNMIISQLRDQGVLLINQDSFYHSLSDEQLEKVQE 70
           +P  P KQPFVIGVAGGTASGKTTVC+MII+QL DQ V+L+NQDSFY  LSD +LEKV E
Sbjct: 21  APAPPLKQPFVIGVAGGTASGKTTVCDMIIAQLHDQRVVLVNQDSFYCPLSDGKLEKVLE 80

Query: 71  YNFDHPGAFNTELLLSCMERLKNGHEVTIPNYDFKTHKSTLVGQKVNPSDVIILEGILIL 130
            NFDHP AFNTELLL+CM++LKNG  V+IPNYDFKTHK+   G+K+N SDVIILEGIL+L
Sbjct: 81  INFDHPDAFNTELLLACMDKLKNGQAVSIPNYDFKTHKNIEPGRKINASDVIILEGILVL 140

Query: 131 HDPRVRELMNMKIFVETDSDLRLARRIKRDTVERGRNIQNVLDQYARFVKPSFEEFILPS 190
           HDPRVR+LMNMKIFV+TD D+RLARRI+RDTVERGR+I NVLDQY +FVKPSFEE+ILPS
Sbjct: 141 HDPRVRDLMNMKIFVDTDCDVRLARRIQRDTVERGRDIDNVLDQYDKFVKPSFEEYILPS 200

Query: 191 KKYADIIIPRGGDNAVAIDLIVQHIHTKLGQHDLCKIYPNVFVISSTFQIRGMHTLIRDV 250
           KKYADIIIPRGGDN +A+DLIVQHI TKLGQHD+CKIYPNVF+I  TFQIRGMHTLIRDV
Sbjct: 201 KKYADIIIPRGGDNDIAVDLIVQHIRTKLGQHDICKIYPNVFIIRLTFQIRGMHTLIRDV 260

Query: 251 KTTKHDFVFYADRLIRMVVEHGLGHLPFTERQITTPTGSIYPGVVFYKRLCGVSVIRSGE 310
           KTTKHDFVFYADRLIR+VVEHGLGHLPFTE+QITTPTGS+Y GVVF +RLCGVS+IRSGE
Sbjct: 261 KTTKHDFVFYADRLIRLVVEHGLGHLPFTEKQITTPTGSVYSGVVFCRRLCGVSIIRSGE 320

Query: 311 SMENALRACCXXXXXXXXXXXXXXSNGRQLIYEKLPADISSRHVLL 356
           SMENALRACC              ++GRQLIYE LP DI+SRHVLL
Sbjct: 321 SMENALRACCKGIKIGKILIHGEGNDGRQLIYENLPDDIASRHVLL 366


>GSVIVT01014838001 assembled CDS
          Length = 479

 Score =  532 bits (1370), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 258/354 (72%), Positives = 299/354 (84%), Gaps = 3/354 (0%)

Query: 4   QSNVSISSPLHPPKQPFVIGVAGGTASGKTTVCNMIISQLRDQGVLLINQDSFYHSLSDE 63
           Q + S +  +H  KQPFVIGVAGG ASGKTTVC+MII QL DQ V+L+NQDSFY++L++E
Sbjct: 35  QPSTSAAESVH--KQPFVIGVAGGAASGKTTVCDMIIEQLHDQRVVLVNQDSFYNNLTEE 92

Query: 64  QLEKVQEYNFDHPGAFNTELLLSCMERLKNGHEVTIPNYDFKTHKSTLV-GQKVNPSDVI 122
           +L +V EYNFDHP AF+TE LL  ME+LK+G  V IP YDFK++K+ +   ++VNPSDVI
Sbjct: 93  ELARVHEYNFDHPDAFDTEQLLCAMEKLKHGQAVDIPKYDFKSYKNNVFPARRVNPSDVI 152

Query: 123 ILEGILILHDPRVRELMNMKIFVETDSDLRLARRIKRDTVERGRNIQNVLDQYARFVKPS 182
           ILEGILI HD RVRELMNMKIFV+TD+D+RLARRI+RDTVE+GR+I  VLDQY++FVKP+
Sbjct: 153 ILEGILIFHDLRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIGMVLDQYSKFVKPA 212

Query: 183 FEEFILPSKKYADIIIPRGGDNAVAIDLIVQHIHTKLGQHDLCKIYPNVFVISSTFQIRG 242
           F++FILP+KKYADIIIPRGGDN VAIDLIVQHI TKLGQHDLCKIYPN++VI STFQIRG
Sbjct: 213 FDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKLGQHDLCKIYPNLYVIQSTFQIRG 272

Query: 243 MHTLIRDVKTTKHDFVFYADRLIRMVVEHGLGHLPFTERQITTPTGSIYPGVVFYKRLCG 302
           MHTLIRD +TTKHDFVFYADRLIR+VVEHGLGHLPFTE+Q+ TPT S+Y GV F KRLCG
Sbjct: 273 MHTLIRDAQTTKHDFVFYADRLIRLVVEHGLGHLPFTEKQVITPTESVYSGVDFCKRLCG 332

Query: 303 VSVIRSGESMENALRACCXXXXXXXXXXXXXXSNGRQLIYEKLPADISSRHVLL 356
           VSVIRSGESMENALRACC               NG+QLIYEKLP DIS RHVLL
Sbjct: 333 VSVIRSGESMENALRACCKGIKIGKILIHREGDNGQQLIYEKLPKDISDRHVLL 386


>GSVIVT01008517001 assembled CDS
          Length = 472

 Score =  502 bits (1293), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 243/342 (71%), Positives = 284/342 (83%), Gaps = 1/342 (0%)

Query: 16  PKQPFVIGVAGGTASGKTTVCNMIISQLRDQGVLLINQDSFYHSLSDEQLEKVQEYNFDH 75
           PKQPFVIGV GGTASGKTTVC+MII QL D  V+L+NQDSFY  L+ ++LE V +YNFDH
Sbjct: 42  PKQPFVIGVTGGTASGKTTVCDMIIQQLHDHRVVLVNQDSFYRGLTAKELEDVHKYNFDH 101

Query: 76  PGAFNTELLLSCMERLKNGHEVTIPNYDFKTH-KSTLVGQKVNPSDVIILEGILILHDPR 134
           P AF+TE LL C+ +LK+G  V +P YDFKTH + +   ++VN SDVIILEGIL+ HD  
Sbjct: 102 PDAFDTEQLLDCIHKLKSGQSVHVPIYDFKTHQRCSDSFRQVNASDVIILEGILVFHDQC 161

Query: 135 VRELMNMKIFVETDSDLRLARRIKRDTVERGRNIQNVLDQYARFVKPSFEEFILPSKKYA 194
           VR+LMNMKIFV+ D+D+RLARRI RDTVERGR+IQ+VL+QYA+FVKP+F+ FILPSKK+A
Sbjct: 162 VRDLMNMKIFVDADADVRLARRISRDTVERGRDIQSVLEQYAKFVKPAFDNFILPSKKFA 221

Query: 195 DIIIPRGGDNAVAIDLIVQHIHTKLGQHDLCKIYPNVFVISSTFQIRGMHTLIRDVKTTK 254
           D+IIPRGG+N VAIDLIVQHI TKLGQHDLCKIYPNV VI STFQIRGMHTLIRD + +K
Sbjct: 222 DVIIPRGGENHVAIDLIVQHIRTKLGQHDLCKIYPNVNVIHSTFQIRGMHTLIRDREISK 281

Query: 255 HDFVFYADRLIRMVVEHGLGHLPFTERQITTPTGSIYPGVVFYKRLCGVSVIRSGESMEN 314
           HDFVFY+DRLIR+VVEHGLG+LPF E+Q+ TPTGS+Y GV F K+LCGVS+IRSGESMEN
Sbjct: 282 HDFVFYSDRLIRLVVEHGLGYLPFLEKQVFTPTGSVYTGVEFCKKLCGVSIIRSGESMEN 341

Query: 315 ALRACCXXXXXXXXXXXXXXSNGRQLIYEKLPADISSRHVLL 356
           ALRACC               NG+QLIYEKLP DIS RHVLL
Sbjct: 342 ALRACCKGIKIGKILIHRDGDNGKQLIYEKLPKDISERHVLL 383


>GSVIVT01001805001 assembled CDS
          Length = 267

 Score =  294 bits (752), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 137/182 (75%), Positives = 156/182 (85%)

Query: 175 YARFVKPSFEEFILPSKKYADIIIPRGGDNAVAIDLIVQHIHTKLGQHDLCKIYPNVFVI 234
           YA+FVKP+F++F++PSKKYAD+IIPRGGDN VAIDLIVQHIHTKLGQH+LCKIYPNV VI
Sbjct: 3   YAKFVKPAFDDFVMPSKKYADVIIPRGGDNHVAIDLIVQHIHTKLGQHNLCKIYPNVNVI 62

Query: 235 SSTFQIRGMHTLIRDVKTTKHDFVFYADRLIRMVVEHGLGHLPFTERQITTPTGSIYPGV 294
            STFQIRGMHTLIRD + +KHDFVFY+DRLIR+VVEHGLGHLPFTE+Q+ TPTGS+Y GV
Sbjct: 63  QSTFQIRGMHTLIRDHEISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSLYTGV 122

Query: 295 VFYKRLCGVSVIRSGESMENALRACCXXXXXXXXXXXXXXSNGRQLIYEKLPADISSRHV 354
            F K+LCGVS++RSGESMENALRACC               NG+QLIYEKLP DIS RHV
Sbjct: 123 DFCKKLCGVSIVRSGESMENALRACCKGIKIGKILIHRDGDNGKQLIYEKLPKDISERHV 182

Query: 355 LL 356
           LL
Sbjct: 183 LL 184


>GSVIVT01008519001 assembled CDS
          Length = 318

 Score =  253 bits (645), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 124/175 (70%), Positives = 140/175 (80%), Gaps = 1/175 (0%)

Query: 182 SFEEFILPSKKYADIIIPRGGDNAVAIDLIVQHIHTKLGQHDLCKIYPNVFVISSTFQIR 241
           +F+ FILPSKK+AD+IIPRGG+N VAIDLIVQHI TKLGQHDLCKIYPNV V+ STFQIR
Sbjct: 56  AFDNFILPSKKFADVIIPRGGENHVAIDLIVQHIRTKLGQHDLCKIYPNVNVMHSTFQIR 115

Query: 242 GMHTLIRDVKTTKHDFVFYADRLIRMVVEHGLGHLPFTERQITTPTGSIYPGVVFYKRLC 301
           GMHTLIRD + +KHDFVFY+DRLIR+VV+HGLG+LPF E+Q  TPTG       F K+LC
Sbjct: 116 GMHTLIRDKEISKHDFVFYSDRLIRLVVKHGLGYLPFLEKQEVTPTG-YKEKFEFCKKLC 174

Query: 302 GVSVIRSGESMENALRACCXXXXXXXXXXXXXXSNGRQLIYEKLPADISSRHVLL 356
           GVS+IRSGESMENALRACC               NG+QLIYEKLP DIS RHVLL
Sbjct: 175 GVSIIRSGESMENALRACCKGIKIGRVFIHRDGDNGKQLIYEKLPNDISERHVLL 229


>GSVIVT01001806001 assembled CDS
          Length = 226

 Score =  224 bits (572), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 110/174 (63%), Positives = 136/174 (78%), Gaps = 2/174 (1%)

Query: 12  PLHPPKQPFVIGVAGGTASGKTTVCNMIISQLRDQGVLLINQDSFYHSLSDEQLEKVQEY 71
           P    KQPFVIGV+GGTASGKTTVC+MII QL D  V+L+NQDSFY  L+ E+ E+V EY
Sbjct: 43  PDSAAKQPFVIGVSGGTASGKTTVCDMIIQQLHDHRVVLVNQDSFYRGLTAEESERVHEY 102

Query: 72  NFDHPGAFNTELLLSCMERLKNGHEVTIPNYDFKTHKSTLVG-QKVNPSDVIILEGILIL 130
           NFDHP AF+TE LL C+ +LK+G  V +P YDFK H+      ++VN SDVIILEGIL+ 
Sbjct: 103 NFDHPDAFDTEQLLECIGKLKSGQSVHVPIYDFKNHRRCSGSFRQVNVSDVIILEGILVF 162

Query: 131 HDPRVRELMNMKIFVETDSDLRLARRIKRDTVERGRNIQNVLDQ-YARFVKPSF 183
           HD RVR LMNMKIFV+TD+D+RLARRI+RDTVERGR++ +VL+Q Y  F++  F
Sbjct: 163 HDQRVRNLMNMKIFVDTDADVRLARRIRRDTVERGRDVNSVLEQLYVWFLRRRF 216


>GSVIVT01008186001 assembled CDS
          Length = 661

 Score = 73.6 bits (179), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 52/181 (28%), Positives = 96/181 (53%), Gaps = 14/181 (7%)

Query: 21  VIGVAGGTASGKTTVCNMIISQLRDQGVLLINQDSFYHSLSDEQLEKVQEYNFDHPGAFN 80
           ++GVAG + +GKT +   +++ +    + +I+ D++  S       ++ + NFD P   +
Sbjct: 68  LVGVAGPSGAGKTVLTEKVLNFM--PSIAVISMDNYNDS------SRIIDGNFDDPRLTD 119

Query: 81  TELLLSCMERLKNGHEVTIPNYDFKTHKSTLVGQK---VNPSDVIILEGILILHDPRVRE 137
              LL  +  LK G  V +P YDFK+  S+ +G +   V  S ++I+EGI  L + R+R 
Sbjct: 120 YGTLLENIHGLKAGKPVQVPIYDFKS--SSRIGYRTVDVPSSRIVIIEGIYALSE-RLRP 176

Query: 138 LMNMKIFVETDSDLRLARRIKRDTVERGRNIQNVLDQYARFVKPSFEEFILPSKKYADII 197
           L+++++ V       L +R+ RD    G+  + ++ Q +  V P ++ FI P  + A I 
Sbjct: 177 LLDLRVSVTGGVHFDLVKRVLRDIQRAGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIK 236

Query: 198 I 198
           I
Sbjct: 237 I 237


>GSVIVT01010166001 assembled CDS
          Length = 663

 Score = 70.9 bits (172), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 50/179 (27%), Positives = 93/179 (51%), Gaps = 10/179 (5%)

Query: 21  VIGVAGGTASGKTTVCNMIISQLRDQGVLLINQDSFYHSLSDEQLEKVQEYNFDHPGAFN 80
           ++G+AG + +GKT     I++ +    + +I+ D++  +       ++ + NFD P   +
Sbjct: 67  LVGLAGPSGAGKTVFTEKILNFM--PSIAVISMDNYNDA------SRIVDGNFDDPRLTD 118

Query: 81  TELLLSCMERLKNGHEVTIPNYDFKTHKST-LVGQKVNPSDVIILEGILILHDPRVRELM 139
            + LL  +  LK G +V IP YDFK+   T     +V  S ++I+EGI  L + ++R L+
Sbjct: 119 YDTLLQNVHDLKAGKQVQIPIYDFKSSSRTGYRTLEVPSSRIVIIEGIHALSE-KMRPLL 177

Query: 140 NMKIFVETDSDLRLARRIKRDTVERGRNIQNVLDQYARFVKPSFEEFILPSKKYADIII 198
           ++++ V       L +R+ RD    G+  + ++ Q +  V P ++ FI P    A I I
Sbjct: 178 DLRVSVTGGIHFDLVKRVLRDIQRAGQEPEEIIQQISETVYPMYKAFIEPDLGTAHIKI 236


>GSVIVT01011555001 assembled CDS
          Length = 267

 Score = 67.0 bits (162), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 72/114 (63%), Gaps = 8/114 (7%)

Query: 88  MERLKNGHEVTIPNYDFKTHKSTLVG--QKVNPSDVIILEGILILHDPRVRELMNMKIFV 145
           ++ +K+G  V  P Y+   H + L+   + + P  ++++EG+  ++D RVR+L++  I++
Sbjct: 5   VKAIKDGIAVEKPIYN---HVTGLLDPPETIKPPKILVIEGLHPMYDARVRDLLDFSIYL 61

Query: 146 ETDSDLRLARRIKRDTVERGRNIQNVLDQY-ARFVKPSFEEFILPSKKYADIII 198
           +  ++++ A +I+RD  ERG +++++     AR  KP F+ +I P K+YAD +I
Sbjct: 62  DISNEVKFAWKIQRDMAERGHSLESIKASIEAR--KPDFDAYIDPQKQYADAVI 113


>GSVIVT01024410001 assembled CDS
          Length = 273

 Score = 65.5 bits (158), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 72/117 (61%), Gaps = 6/117 (5%)

Query: 84  LLSCMERLKNGHEVTIPNYDFKTHKSTLVG--QKVNPSDVIILEGILILHDPRVRELMNM 141
           +   +E LK+G  +  P Y+   H + L+   + ++P  +++LEG+  L+D RVR+L++ 
Sbjct: 1   MFEQIEALKHGFPIEKPIYN---HATGLLDPPELIHPPKILVLEGLHPLYDSRVRDLLDF 57

Query: 142 KIFVETDSDLRLARRIKRDTVERGRNIQNVLDQYARFVKPSFEEFILPSKKYADIII 198
            I+++  ++++ + +I+RD  ERG ++++V     +  K  F+ +I P K+YA +++
Sbjct: 58  SIYLDISNEVKFSWKIQRDMAERGHSLESVRAS-IKARKSDFDAYIEPQKQYASVVM 113


>GSVIVT01001804001 assembled CDS
          Length = 896

 Score = 62.0 bits (149), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 30/49 (61%), Positives = 32/49 (65%)

Query: 308 SGESMENALRACCXXXXXXXXXXXXXXSNGRQLIYEKLPADISSRHVLL 356
           +GESMENALRACC               NG+QLIYEKLP DIS RHVLL
Sbjct: 765 NGESMENALRACCKGIKIGKILIHRDGDNGKQLIYEKLPKDISERHVLL 813