Jatropha Genome Database

JcCB0430181.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0430181.10 - phase: 0 /partial
         (317 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01036969001 assembled CDS                                       270   7e-73

>GSVIVT01036969001 assembled CDS
          Length = 531

 Score =  270 bits (690), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 138/217 (63%), Positives = 164/217 (75%), Gaps = 9/217 (4%)

Query: 19  DEFYEKIEAPKFVDLNAPDPYHHGDDCYWFCMRVGCDQKHEEEMDSETIYKNFLLRVMAA 78
           +EFYEKIEAPKFVD   PD     DD YWFC+RVGCDQKHEEEMD E IYK+F+LRVMAA
Sbjct: 12  EEFYEKIEAPKFVDFTKPD-LPRPDDRYWFCLRVGCDQKHEEEMDHEAIYKDFVLRVMAA 70

Query: 79  RSPNIRLRKALHKKDSSTDLKCPRTVPAKPSKPRVSRLALISSISKRIVDPKVKVKPLSK 138
           RSPN+RLRK L++K  ST +KCP + PAKPSK R+SRLA+ISS S++I + KVK      
Sbjct: 71  RSPNVRLRKMLNRKAPSTTMKCPLSAPAKPSKSRLSRLAVISSFSQKITEAKVK------ 124

Query: 139 QNATPNAKAKQQPSIIAKALTTPRAKKQLSNPEAFRSVRNPKTTATAMPKNRVVAKTLVF 198
             +TP  + KQ  S++ KALTTPR KK   N  +FRSVRNPK T  A+PKNRVVAK LVF
Sbjct: 125 -GSTPKPEVKQS-SVVVKALTTPRNKKYPQNRNSFRSVRNPKATTIAVPKNRVVAKALVF 182

Query: 199 DSPKKSVRTKSSLELNTPVKTLCAGMKKLEITSAKKQ 235
            SPKK  + K+SLEL+TPV  +C GMK+LEITS +KQ
Sbjct: 183 HSPKKPRQKKTSLELHTPVSKICQGMKQLEITSQRKQ 219