Jatropha Genome Database

JcCB0429731.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0429731.20 - phase: 0 
         (180 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01016373001 assembled CDS                                       333   2e-92
GSVIVT01034037001 assembled CDS                                        59   1e-09
GSVIVT01034516001 assembled CDS                                        56   1e-08
GSVIVT01034034001 assembled CDS                                        56   1e-08
GSVIVT01012513001 assembled CDS                                        53   7e-08

>GSVIVT01016373001 assembled CDS
          Length = 393

 Score =  333 bits (855), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 163/179 (91%), Positives = 169/179 (94%), Gaps = 1/179 (0%)

Query: 1   MGVYGPRTTYVLALKDFPGTHEFLLLDDGKWQHVKETTEIGEGKLFSPGNLRATSDNPDY 60
           MG+YGPRTTYVLALKD PGTHEFLLLD+GKWQHVK+TTEIGEGKLFSPGNLRAT DNPDY
Sbjct: 215 MGIYGPRTTYVLALKDIPGTHEFLLLDEGKWQHVKDTTEIGEGKLFSPGNLRATFDNPDY 274

Query: 61  DKLIHYYVREKYTLRYTGGMVPDVNQIIVKEKGIFTNVISPSSKAKLRLLFEVAPLGFLI 120
           DKLI+YYVREKYTLRYTGGMVPDVNQIIVKEKGIFTNV SPSSKAKLRLLFEVAPLGFLI
Sbjct: 275 DKLINYYVREKYTLRYTGGMVPDVNQIIVKEKGIFTNVTSPSSKAKLRLLFEVAPLGFLI 334

Query: 121 EKAGGYSSDGHISVLDKEIKNLDDRTQVAYGSKNEIIRFEETLYGKSRLKTGGVPVGAA 179
           EKAGG+SSDG  SVLDK I NLD+RTQVAYGSKNEIIRFEETLYG SRLK  GVPVGAA
Sbjct: 335 EKAGGFSSDGTQSVLDKVINNLDERTQVAYGSKNEIIRFEETLYGSSRLK-AGVPVGAA 392


>GSVIVT01034037001 assembled CDS
          Length = 355

 Score = 58.9 bits (141), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 35/93 (37%), Positives = 54/93 (58%), Gaps = 2/93 (2%)

Query: 72  YTLRYTGGMVPDVNQIIVKEKGIFTNVISPSSK-AKLRLLFEVAPLGFLIEKAGGYSSDG 130
           Y+ RY G +V D ++ ++   GI+       SK  KLRLL+E AP+ +L+E+AGG  SDG
Sbjct: 263 YSARYIGSLVGDFHRTLLY-GGIYGYPRDKKSKNGKLRLLYECAPMSYLVEQAGGKGSDG 321

Query: 131 HISVLDKEIKNLDDRTQVAYGSKNEIIRFEETL 163
           H  +LD +   +  R  +  GS  E+ + E+ L
Sbjct: 322 HQRILDIQPVEIHQRVPLYIGSVEEVEKLEKYL 354


>GSVIVT01034516001 assembled CDS
          Length = 339

 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 54/88 (61%), Gaps = 8/88 (9%)

Query: 73  TLRYTGGMVPDVNQIIVKEKGIFTNVISPSSK----AKLRLLFEVAPLGFLIEKAGGYSS 128
           +LRY G MV DV++ ++   GIF   + P+ K     KLR+L+EV P+ FL+E+AGG + 
Sbjct: 244 SLRYIGSMVADVHRTLLY-GGIF---LYPADKKSPNGKLRVLYEVFPMSFLMEQAGGQAF 299

Query: 129 DGHISVLDKEIKNLDDRTQVAYGSKNEI 156
            G    LD   KN+ +R+ +  GS +++
Sbjct: 300 TGKQRALDLVPKNIHERSPIFLGSYDDV 327


>GSVIVT01034034001 assembled CDS
          Length = 374

 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/124 (31%), Positives = 72/124 (58%), Gaps = 12/124 (9%)

Query: 46  FSPGNLRATSDNPDYDKLIHYYVR-----EKYTLRYTGGMVPDVNQIIVKEKGIFTNVIS 100
           F+ GN     DN    + +H+  +     + Y+ RY G +V +++++++   GI+ N  +
Sbjct: 256 FNEGNHELWDDN--LKRYLHHLRQPGPNGKPYSGRYIGCLVGEIHRMLLY-GGIYGNPKN 312

Query: 101 PSSK-AKLRLLFEVAPLGFLIEKAGGYSSDGHISVLDKEIKNLDDRTQVAYGSKNEIIRF 159
            +SK   LRLL+E AP+ +L+E+AGG ++DG+  +LD +     +RT +  GS  E+ + 
Sbjct: 313 MNSKKGNLRLLYECAPMSYLVEQAGGKATDGNQRILDIQPT---ERTPIFIGSPVEVEKL 369

Query: 160 EETL 163
           E+ L
Sbjct: 370 EKYL 373


>GSVIVT01012513001 assembled CDS
          Length = 362

 Score = 53.1 bits (126), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 53/102 (51%), Gaps = 8/102 (7%)

Query: 70  EKYTLRYTGGMVPDVNQIIVKEKGIFTNVISPSSKAKLRLLFEVAPLGFLIEKAGGYSSD 129
           +KY+ RY   +V D ++ ++   G+  N      ++ LRL++E  PL FL+E+AGG  SD
Sbjct: 263 KKYSARYICSLVADFHRTLMY-GGVAMN-----PRSHLRLVYEANPLSFLVEQAGGRGSD 316

Query: 130 GHISVLDKEIKNLDDRTQVAYGSKNEIIRFEETLYGKSRLKT 171
           G I +L  +   L  R  +  GS  +I   E   YG  + K 
Sbjct: 317 GKIRILSIQPVKLHQRLPLFLGSPEDIEELES--YGNVQQKV 356