Jatropha Genome Database

JcCB0429731.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0429731.10 - phase: 0 
         (123 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01035607001 assembled CDS                                        63   3e-11

>GSVIVT01035607001 assembled CDS
          Length = 163

 Score = 62.8 bits (151), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 30/124 (24%), Positives = 66/124 (53%), Gaps = 3/124 (2%)

Query: 1   MPMVERCTDLVGDEGVPGYVRLVSGFMFPQEDGERS---WIKERLVCMDLTSYNYVYKME 57
           MP ++ C  + G +G PG +R  S      ++ +++   W+KE+L+ +D  ++ + Y++ 
Sbjct: 39  MPSLDTCYQVEGVKGQPGLIRYCSSTAASPDNPDQTTVNWVKEKLLTIDPINHCFSYEVL 98

Query: 58  ASNVGLDGSVNTLKLVDYGDDSTLVNWSFQIDPLEGASEDNIMDYLGFLYKSCINRIEAA 117
            +N+G +  V T K++       L+ WSF  DP++G   +++  Y+    +    ++E  
Sbjct: 99  DNNMGFNSYVTTFKVIPINGGGCLIQWSFVCDPVQGWRYEDLASYIDSSLQFMAKKMEET 158

Query: 118 IKAA 121
           ++ A
Sbjct: 159 LQHA 162