Jatropha Genome Database

JcCB0429541.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0429541.10 + phase: 0 /partial
         (298 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01012724001 assembled CDS                                       285   2e-77

>GSVIVT01012724001 assembled CDS
          Length = 1445

 Score =  285 bits (728), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 148/299 (49%), Positives = 193/299 (64%), Gaps = 40/299 (13%)

Query: 1   VASQVQELIFEMIHKREEVRACRSVPYPCICFRPPYMCPSVTDEIQNFNPTQCTESSPTP 60
           +ASQVQ L+ EM+HKR+++ + R VPYP  CFRPPY+ PS+ DEI    P Q +      
Sbjct: 383 IASQVQGLLSEMLHKRDQILSWRHVPYPTFCFRPPYIHPSILDEIPKNCPAQSS------ 436

Query: 61  STQMFVSQNISTTRGSNDASFDGQINSSQTAAYFWVPFVNGPIISILDAAPLNLVGRYME 120
                                            FWVP+V  P++SILD APL+LV  YM+
Sbjct: 437 ---------------------------------FWVPYVCDPVLSILDVAPLSLVRGYMD 463

Query: 121 EVFNAVREYRQRHLDSSCDTWNEREPLFHLPHFPSLTESNSEVSKRNTPPAISTG-PTMP 179
           ++  AVREY+++H+  +CD+  +REPLF  P F SL E++ EVS+   PPA +    +  
Sbjct: 464 DISTAVREYQRQHVQGTCDSRFDREPLFPFPSFQSLAEASGEVSRGTMPPATNMELVSSS 523

Query: 180 GQQLPKKTLAASIVENAKKQSVALVPKDISMLAQRFSSLFNPALFPHKPPPAAVANRVLF 239
             Q PKKTLAA++VE+ KKQSVALV K+I  LAQ+F  LFN ALFPHKPPP  VANRVLF
Sbjct: 524 SHQPPKKTLAAALVESTKKQSVALVHKEIVKLAQKFFPLFNSALFPHKPPPTPVANRVLF 583

Query: 240 TDSEDELLALGIMEYNTDWKAIQQRFLPCKSKHQVVHIRVHNANTQPPLTSVKGDRRRK 298
           TDSEDELLA+G+MEYN+DWKAIQQRFLPCK+KHQ+   + +  +++ P   +K  RR K
Sbjct: 584 TDSEDELLAMGLMEYNSDWKAIQQRFLPCKTKHQIFVRQKNRCSSKAPDNPIKAVRRMK 642