Jatropha Genome Database

JcCB0429441.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0429441.10 + phase: 0 
         (73 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01008825001 assembled CDS                                       135   3e-33
GSVIVT01008841001 assembled CDS                                        77   2e-15
GSVIVT01022436001 assembled CDS                                        72   4e-14
GSVIVT01019825001 assembled CDS                                        69   4e-13
GSVIVT01018933001 assembled CDS                                        50   2e-07

>GSVIVT01008825001 assembled CDS
          Length = 341

 Score =  135 bits (341), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 60/68 (88%), Positives = 65/68 (95%)

Query: 1  MAPVLPNSQPWVEKYRPKQVKDVAHQEEVVRVLTNTIETGDCPHMLFYGPPGTGKTTSAL 60
          MAPVL +SQPWVEKYRPKQVKDVAHQ+EVVRVLTNT+ET +CPHMLFYGPPGTGKTT+AL
Sbjct: 1  MAPVLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETTNCPHMLFYGPPGTGKTTTAL 60

Query: 61 AIARQLFG 68
          AIA QLFG
Sbjct: 61 AIAHQLFG 68


>GSVIVT01008841001 assembled CDS
          Length = 360

 Score = 76.6 bits (187), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/61 (49%), Positives = 42/61 (68%)

Query: 8  SQPWVEKYRPKQVKDVAHQEEVVRVLTNTIETGDCPHMLFYGPPGTGKTTSALAIARQLF 67
          + PWVEKYRP+ + DVA   ++V  +         PH+L YGPPGTGKT++ LA+AR+L+
Sbjct: 36 ATPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLY 95

Query: 68 G 68
          G
Sbjct: 96 G 96


>GSVIVT01022436001 assembled CDS
          Length = 354

 Score = 72.4 bits (176), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 29/58 (50%), Positives = 41/58 (70%)

Query: 11 WVEKYRPKQVKDVAHQEEVVRVLTNTIETGDCPHMLFYGPPGTGKTTSALAIARQLFG 68
          WV+KYRPK + ++   ++V + L   +   DCPH+LFYGPPG+GK T  +AI RQ+FG
Sbjct: 3  WVDKYRPKTLDNLIVHDDVAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMAILRQMFG 60


>GSVIVT01019825001 assembled CDS
          Length = 330

 Score = 69.3 bits (168), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 30/59 (50%), Positives = 39/59 (66%)

Query: 10 PWVEKYRPKQVKDVAHQEEVVRVLTNTIETGDCPHMLFYGPPGTGKTTSALAIARQLFG 68
          PWVEKYRP +V D+   E+ V  L      G+ P+++  GPPGTGKTTS LA+A +L G
Sbjct: 13 PWVEKYRPTKVADIVGNEDTVSRLQVIARDGNMPNLILSGPPGTGKTTSVLALAHELLG 71


>GSVIVT01018933001 assembled CDS
          Length = 708

 Score = 50.4 bits (119), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 35/60 (58%)

Query: 9   QPWVEKYRPKQVKDVAHQEEVVRVLTNTIETGDCPHMLFYGPPGTGKTTSALAIARQLFG 68
           Q W +K+RP  +      ++  ++L   + +  CPH+LF GP G+GK    +A+ R+++G
Sbjct: 355 QFWADKHRPASLNGFTLHKQEAQLLKQLVSSDICPHVLFKGPSGSGKKALTMALLREIYG 414