Jatropha Genome Database

JcCB0428571.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0428571.10 + phase: 0 /partial
         (164 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01011645001 assembled CDS                                       139   5e-34
GSVIVT01011643001 assembled CDS                                       138   1e-33
GSVIVT01007792001 assembled CDS                                        54   3e-08

>GSVIVT01011645001 assembled CDS
          Length = 943

 Score =  139 bits (351), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 74/164 (45%), Positives = 101/164 (61%), Gaps = 33/164 (20%)

Query: 1   MGKTIHVYGFPPDVTVDEVKKCLESHSGDGTVFAMKIRETKNGGQRKYAIVQFQTARDAE 60
           MGKTI VYG P +V+ +E+K+ LE ++G+GT+ A++I++ K+G    +A VQF + R AE
Sbjct: 1   MGKTIQVYGVPSNVSANEIKEFLEKYTGEGTIEALEIKQPKSGVSMTHAKVQFTSLRLAE 60

Query: 61  LIISLNKRLRYGTSYLKARTLAKDIVPNPRTFLHSMDHITLHFGCRISKEKFSVLWTGTN 120
           LIISL K+L YG +YLKAR +  DI+P PRTFLHSMD ITLHFG ++S E+F        
Sbjct: 61  LIISLAKQLWYGGNYLKAREMDLDIIPKPRTFLHSMDRITLHFGYQMSNERFC------- 113

Query: 121 VSVNFGFGLRKLQFFLSHEQMDYKLDLSYENVWQIELHCPRGRS 164
                                     LS EN+WQI+L  PRG++
Sbjct: 114 --------------------------LSCENIWQIQLREPRGQN 131


>GSVIVT01011643001 assembled CDS
          Length = 919

 Score =  138 bits (347), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 65/123 (52%), Positives = 89/123 (72%), Gaps = 1/123 (0%)

Query: 1   MGKTIHVYGFPPDVTVDEVKKCLESHSGDGTVFAMKIRETKNGGQRKYAIVQFQTARDAE 60
           M KTI VYGFP  V+ DE+K+ LE ++G+GT+ A++I++ ++G    +A VQF +   AE
Sbjct: 1   MSKTIQVYGFPSIVSADEIKEFLEKYTGEGTIEALEIKQPRSGASMTHAKVQFTSFELAE 60

Query: 61  LIISL-NKRLRYGTSYLKARTLAKDIVPNPRTFLHSMDHITLHFGCRISKEKFSVLWTGT 119
            II+L  K++ YG +YLKAR +  DI+P PR FLHSMD ITLHFGC++S E+F VLW   
Sbjct: 61  FIITLCKKKVWYGRNYLKAREMDLDIIPKPRAFLHSMDRITLHFGCQMSDERFCVLWKAI 120

Query: 120 NVS 122
           NVS
Sbjct: 121 NVS 123


>GSVIVT01007792001 assembled CDS
          Length = 1127

 Score = 53.9 bits (128), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 73/162 (45%), Gaps = 3/162 (1%)

Query: 4   TIHVYGFPPDVTVDEVKKCLESHSGDGTVFAMKIR-ETKNGGQRKYAIVQFQT--ARDAE 60
           T+ V   P      E+   LES  G  T++A++I  E KN   R +  VQF+T  A+ A 
Sbjct: 8   TVKVSNIPKTAIAKELWSFLESKLGPNTIYALEIATEHKNWKSRGFGRVQFETLQAKRAA 67

Query: 61  LIISLNKRLRYGTSYLKARTLAKDIVPNPRTFLHSMDHITLHFGCRISKEKFSVLWTGTN 120
            ++SL   L +  S L       DI+  P    + +D   LH G  +  +   VL +   
Sbjct: 68  DLLSLQGDLVFRGSSLSISATFDDIIVRPVEPRNQVDSGVLHVGFLVEDDCMLVLESWEG 127

Query: 121 VSVNFGFGLRKLQFFLSHEQMDYKLDLSYENVWQIELHCPRG 162
           V         +++F++  +   YKL++ +++V +    C  G
Sbjct: 128 VKTLVMPERNRVEFWVDKDGERYKLEVPFDDVLESSACCLGG 169