Jatropha Genome Database

JcCB0428411.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0428411.10 + phase: 0 /partial
         (355 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01017422001 assembled CDS                                       569   e-163
GSVIVT01015682001 assembled CDS                                        91   1e-18
GSVIVT01017394001 assembled CDS                                        64   8e-11
GSVIVT01015945001 assembled CDS                                        50   1e-06

>GSVIVT01017422001 assembled CDS
          Length = 522

 Score =  569 bits (1467), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 272/326 (83%), Positives = 298/326 (91%)

Query: 29  NFLRKLEKELPGGRTHFVETSGLPISTYFSAMKILWLMENVDAVKLATKTGDALFGTVDT 88
           +  RKLEKELPGGRTHFVET GLPISTYFSA+K+LWL+ENVDAVK A + GDALFGT+DT
Sbjct: 116 SICRKLEKELPGGRTHFVETCGLPISTYFSALKLLWLLENVDAVKKAVEAGDALFGTIDT 175

Query: 89  WLIWNLTGGVSGGLHVTDVSNASRTMLMNIKTLDWDKTTLQTLGIPAGILPKIVSNSEII 148
           WLIWN+TGG++GG+HVTDVSNASRTMLMN+KTLDWDK TL TLGI A ILPKIVSN+EII
Sbjct: 176 WLIWNMTGGLNGGVHVTDVSNASRTMLMNLKTLDWDKPTLDTLGISAEILPKIVSNAEII 235

Query: 149 GNVGKGWPVLGVPIAGCLGDQHAAMVGQGCRKGEAKSTYGTGAFILLNTGEKIVKSNHGL 208
           G V KGWP+ G+PI+GCLGDQHAAM+GQ CRKGEAKSTYGTGAFILLNTGE++++S HGL
Sbjct: 236 GTVAKGWPISGLPISGCLGDQHAAMLGQACRKGEAKSTYGTGAFILLNTGEEVIESKHGL 295

Query: 209 LTTLAFKLGPKAPTNYALEGSIAIAGAAVQWLRDGLGIINVASESEVLAKQVDSSGGVYF 268
           LTTLAFKLG +APTNYALEGSIAIAGAAVQWLRD LGII+ ASE E LA +VDSSGGVYF
Sbjct: 296 LTTLAFKLGREAPTNYALEGSIAIAGAAVQWLRDSLGIISTASEIEELAAKVDSSGGVYF 355

Query: 269 VPAFNGLFAPHWRDDARGVCVGITRFTTKAHIARAVLESMCFQVKDVLDSMQKDTGEKGE 328
           VPAFNGLFAP WRDDARGVC+GITRFT K+HIARAVLESMCFQVKDVLDSM KD GEKGE
Sbjct: 356 VPAFNGLFAPWWRDDARGVCIGITRFTNKSHIARAVLESMCFQVKDVLDSMHKDAGEKGE 415

Query: 329 QNNAKGEFLLRVDGGATVNNLLMQIQ 354
             N KGEFLLRVDGGAT+NNLLMQIQ
Sbjct: 416 VKNEKGEFLLRVDGGATINNLLMQIQ 441


>GSVIVT01015682001 assembled CDS
          Length = 284

 Score = 90.5 bits (223), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 46/73 (63%), Positives = 55/73 (75%), Gaps = 2/73 (2%)

Query: 50  GLPISTYFSAMKILWLMENVDAVKLATKTGDALFGTVDTWLIWNLTGGVSGGLHVTDVSN 109
            LPISTYFSA+K LWLMENVD VK A + GD ++   +  LIWN+  G++GG HV DVSN
Sbjct: 209 NLPISTYFSALKRLWLMENVDVVKKAVEGGDIVWN--NRQLIWNMIRGLNGGAHVIDVSN 266

Query: 110 ASRTMLMNIKTLD 122
           A RTML+N KTLD
Sbjct: 267 AFRTMLINPKTLD 279


>GSVIVT01017394001 assembled CDS
          Length = 117

 Score = 64.3 bits (155), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 30/36 (83%), Positives = 31/36 (86%)

Query: 319 MQKDTGEKGEQNNAKGEFLLRVDGGATVNNLLMQIQ 354
           M KD GEKGE  N KGEFLLRVDGGAT+NNLLMQIQ
Sbjct: 1   MHKDAGEKGEVKNEKGEFLLRVDGGATINNLLMQIQ 36


>GSVIVT01015945001 assembled CDS
          Length = 66

 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/36 (72%), Positives = 27/36 (75%), Gaps = 1/36 (2%)

Query: 319 MQKDTGEKGEQNNAKGEFLLRVDGGATVNNLLMQIQ 354
           M KD GEKGE  N K EFLL V GGAT+ NLLMQIQ
Sbjct: 1   MHKDAGEKGEVKNEK-EFLLTVAGGATITNLLMQIQ 35