Jatropha Genome Database

JcCB0428401.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0428401.10 - phase: 0 
         (146 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01034037001 assembled CDS                                       160   2e-40
GSVIVT01034034001 assembled CDS                                       132   5e-32
GSVIVT01034516001 assembled CDS                                        64   4e-11

>GSVIVT01034037001 assembled CDS
          Length = 355

 Score =  160 bits (405), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 81/89 (91%), Positives = 85/89 (95%)

Query: 57  MAVSTTSDAETKKKNMFEIQTLTNWLLKQEQAGVIDAELTIVLSSISMACKQIASLVQRA 116
           MAV T S+AETKKK+ FEIQ LT+WLLKQEQAGVIDAELTIV+SSISMACKQIASLVQRA
Sbjct: 1   MAVGTASEAETKKKSGFEIQALTSWLLKQEQAGVIDAELTIVISSISMACKQIASLVQRA 60

Query: 117 SISNLTGVQGAVNVQGEDQKKLDVVSNEV 145
           SISNLTGVQGAVNVQGEDQKKLDVVSNEV
Sbjct: 61  SISNLTGVQGAVNVQGEDQKKLDVVSNEV 89


>GSVIVT01034034001 assembled CDS
          Length = 374

 Score =  132 bits (333), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 66/95 (69%), Positives = 78/95 (82%), Gaps = 1/95 (1%)

Query: 51  AGGVKCMAVSTTSDAETKKKNMFEIQTLTNWLLKQEQAGVIDAELTIVLSSISMACKQIA 110
           A G++       SD   +KKN FEI+ LT WLLKQEQ G+IDAELTIVLSSIS+ACK+IA
Sbjct: 18  AKGIRTGCPDAPSDG-FRKKNEFEIENLTTWLLKQEQDGIIDAELTIVLSSISLACKRIA 76

Query: 111 SLVQRASISNLTGVQGAVNVQGEDQKKLDVVSNEV 145
           SL+QR+SISNLTG QG +NVQGEDQKK+DV+SNEV
Sbjct: 77  SLLQRSSISNLTGGQGTINVQGEDQKKVDVISNEV 111


>GSVIVT01034516001 assembled CDS
          Length = 339

 Score = 63.5 bits (153), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 31/73 (42%), Positives = 49/73 (67%), Gaps = 1/73 (1%)

Query: 74  EIQTLTNWLL-KQEQAGVIDAELTIVLSSISMACKQIASLVQRASISNLTGVQGAVNVQG 132
           ++ T+T ++L +Q +      + TI+LS I + CK + + V +A ++ L G+ G  NVQG
Sbjct: 11  DLMTITRYVLNEQSRHPESRGDFTILLSHIVLGCKFVCTAVNKAGLAKLIGLAGETNVQG 70

Query: 133 EDQKKLDVVSNEV 145
           E+QKKLDV+SNEV
Sbjct: 71  EEQKKLDVLSNEV 83