Jatropha Genome Database

JcCB0428011.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0428011.10 + phase: 1 /partial
         (229 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01001185001 assembled CDS                                       165   2e-41
GSVIVT01001186001 assembled CDS                                       122   1e-28

>GSVIVT01001185001 assembled CDS
          Length = 399

 Score =  165 bits (418), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 111/317 (35%), Positives = 160/317 (50%), Gaps = 93/317 (29%)

Query: 1   ISMIIEEKRQSFNVQRGDVLRIRAGTPLYLINRDEKEKLYVVSVMVPVNIPGEFEIFSAS 60
           +S++ + KR+SFN+++GD++RIRAGT +Y+INRD+ +KL +  ++ PV +P EF+ F   
Sbjct: 88  LSLVSQGKRESFNIKQGDIVRIRAGTTIYMINRDKNKKLRIAKLLQPVALPDEFQPFYGP 147

Query: 61  GTEDSESFYEAFSWELLEAAL--------------------KPPGEQIQAMSHREEGGGV 100
             E+ +SFY AFS ELL +AL                    K   +QIQA+S REE G  
Sbjct: 148 AGENPQSFYRAFSEELLSSALKVEQDRVQRVIKQQNKGVIVKASEQQIQALSQREESGMF 207

Query: 101 -WPFG-TESIGPISIL-KNPVFRNNYGQLFEVGSRDFKQQLRDLDLSVSVANISRASR-- 155
            +PFG TES    ++L K P   N YG+L E  + +F QQL+D+D++VS +NI++ S   
Sbjct: 208 PFPFGSTESKRVFNLLSKEPSISNRYGRLHEADANEF-QQLQDMDIAVSYSNITKGSMEG 266

Query: 156 ----------------NNNLEVVCFEINEEGNTRH-----------------------LL 176
                              +E+ C    ++  + H                       ++
Sbjct: 267 PFFNTRATKIAVVVKGEGYMEMACPHQQQQSASPHYQRLSSPLKRGMLFVVPAGHPLIVV 326

Query: 177 AGKN------------------------NIVNKMEKQAKELAFGVSEREVDQAFGRQNEE 212
           AG N                        NIVN +EK+AKELAF +  REVD+ F +QNE 
Sbjct: 327 AGNNRNLEIVCFDVNAENNRRESLAGDKNIVNALEKEAKELAFSIPAREVDEVFAKQNEW 386

Query: 213 WFFPGPRRGSFEGHAVA 229
           WFFPGPR     GHA A
Sbjct: 387 WFFPGPR----GGHAYA 399


>GSVIVT01001186001 assembled CDS
          Length = 1361

 Score =  122 bits (307), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 71/177 (40%), Positives = 104/177 (58%), Gaps = 26/177 (14%)

Query: 1   ISMIIEEKRQSFNVQRGDVLRIRAGTPLYLINRDEKEKLYVVSVMVPVNIPGEFEIFSAS 60
           I+M+ + KR SF ++ GD++RI AG  L+LIN  + +KL +   ++PV IPG FE F  +
Sbjct: 249 ITMVCQGKRISFRIRIGDIVRIPAGITLHLINSHKNQKLRIAYFLLPVGIPGRFEPFHGA 308

Query: 61  GTEDSESFYEAFSWELLEAA--------------------LKPPGEQIQAMS--HREEGG 98
             E+ +SFY AFS +LL +A                    +K  GEQIQA+S     E  
Sbjct: 309 AGENPQSFYRAFSPKLLSSAFKVEEGTLERVFQQQTKGHFIKASGEQIQALSGGQHGEAA 368

Query: 99  GVWPFGT-ESIGPISIL--KNPVFRNNYGQLFEVGSRDFKQQLRDLDLSVSVANISR 152
           G+WPF + ES  P+  L  K+P   NNYG+L E  + DF+ QL+D+D+ +S ANI++
Sbjct: 369 GIWPFTSGESKRPVFNLLNKDPSVCNNYGRLHEADAEDFR-QLKDMDIEISYANITQ 424



 Score = 84.0 bits (206), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 39/61 (63%), Positives = 46/61 (75%)

Query: 158 NLEVVCFEINEEGNTRHLLAGKNNIVNKMEKQAKELAFGVSEREVDQAFGRQNEEWFFPG 217
           NLE+VCF IN E N R  LAGK N+VN +EK+AKELAF +  REVD+ F +Q EE FFPG
Sbjct: 500 NLEIVCFGINAENNRREPLAGKGNVVNGLEKEAKELAFALPAREVDKVFRKQKEELFFPG 559

Query: 218 P 218
           P
Sbjct: 560 P 560