Jatropha Genome Database

JcCB0426941.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0426941.10 + phase: 0 
         (452 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01031305001 assembled CDS                                       444   e-125

>GSVIVT01031305001 assembled CDS
          Length = 659

 Score =  444 bits (1143), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 243/423 (57%), Positives = 304/423 (71%), Gaps = 11/423 (2%)

Query: 1   MAKDQSISVKDTVHKLQLSLLEGIKNEDQLFTAGSLMSRSDYEDVVTERSIANLCGYPLC 60
           MA DQ I+VKD VHKLQL LLEGI+NE+QLF AGSLMSRSDYEDVVTER+IANLCGYPLC
Sbjct: 1   MAGDQPIAVKDAVHKLQLFLLEGIQNENQLFAAGSLMSRSDYEDVVTERTIANLCGYPLC 60

Query: 61  NNSLPLDRPYKGRYRISLKEHKVYDLHETYMYCSSSCIVNSRAFAGSLQEERCSVLNPMK 120
           +NSLP +R  KG YRISLKEHKVYDLHETYMYCSS C+VNSR+FAGSLQEERCSVLN  +
Sbjct: 61  SNSLPSERLRKGHYRISLKEHKVYDLHETYMYCSSGCVVNSRSFAGSLQEERCSVLNSER 120

Query: 121 LDEILRMFNNLSLDS-KNLVENGDLGLSNLKIQEKIESNVGEVSLEEWIGPSNAIEGYVP 179
           ++ ILR+F   SL+S K L ++GDLGLS LKI+E +E   GEVS+E+WIGPSNAIEGYVP
Sbjct: 121 INGILRLFGESSLESNKILGKHGDLGLSELKIRENVEKKAGEVSMEDWIGPSNAIEGYVP 180

Query: 180 QRDRDFKGSSFKNPKEASKAISTKPVNKQECFFNDMDFMSTIITKDEYSISKAPSGSIST 239
           QRDR+ K  + KN KE SK+ ++K  + +    ++MDF+ TIIT+DEYSISK+  G   T
Sbjct: 181 QRDRNLKPKNIKNRKEGSKSSNSKMDSGKNFVIDEMDFVRTIITEDEYSISKSSKGLKDT 240

Query: 240 GSDMKLQEQRGKET--HKGSEAQSSSPGKHAFVKTXXXXXXXXXXQII-KEELSDKDLLS 296
            S  K +E + K +   + S  + S+P      ++          ++I K+E S  ++ S
Sbjct: 241 TSHAKSKEPKEKASIGDQLSMLEKSAPPIQNDSESKLRESKGRRSRVIFKDEFSTAEVPS 300

Query: 297 ASNYSQTGSSMNNAEPEEKSGAKQAANLSESMLKPSLKPSGAKKSVHSVTWADEKFDNAK 356
               SQ+GS +N  + +E+   + AA L  + LK  LKPSG KK   SVTWADEK D+A 
Sbjct: 301 VP--SQSGSELNGVKGKEEYHTENAAQLGPTKLKSCLKPSGGKKVTRSVTWADEKMDSAD 358

Query: 357 SRNLCEVREMEDTK---SGLEILDSLENNNDNMLRFESAEACAIALSQAAEAVASGDADV 413
           SR+ C+VRE+E  K   +GL  +D    ++DN LRF SAEACAIALSQAAEAVASG+ D+
Sbjct: 359 SRDFCKVRELEVKKEDPNGLGDIDV--GDDDNALRFASAEACAIALSQAAEAVASGETDM 416

Query: 414 NDA 416
            DA
Sbjct: 417 TDA 419