Jatropha Genome Database

JcCB0426111.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0426111.10 - phase: 0 /partial
         (118 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01022223001 assembled CDS                                       199   2e-52

>GSVIVT01022223001 assembled CDS
          Length = 585

 Score =  199 bits (506), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 94/117 (80%), Positives = 105/117 (89%)

Query: 2   GPGKSLFDAISGAFGNIRIIAEDLGVITEDVVQLRKSIGAPGMAVLQFGFGSDADNPHLP 61
           GPGKSLFDAI  A G I I+AEDLGVITEDV+QLRK I APGMAVLQFGFGSDADNPHLP
Sbjct: 408 GPGKSLFDAIFRAVGKINIVAEDLGVITEDVIQLRKYIRAPGMAVLQFGFGSDADNPHLP 467

Query: 62  HNHEANQVVYTGTHDNDTTRGWWDNLKKREKSNVLKYLSITEEDDMPWALIQAAVAS 118
           HNHE N+VVYTGTHDNDTTRGWWD L++ EKSNVLKY+++T EDD+ WALIQAA++S
Sbjct: 468 HNHEQNEVVYTGTHDNDTTRGWWDILEQEEKSNVLKYVTVTGEDDISWALIQAALSS 524