Jatropha Genome Database

JcCB0426021.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0426021.10 + phase: 2 /pseudo/partial
         (474 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01007978001 assembled CDS                                       413   e-116
GSVIVT01003228001 assembled CDS                                       311   6e-85

>GSVIVT01007978001 assembled CDS
          Length = 524

 Score =  413 bits (1061), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 212/397 (53%), Positives = 259/397 (65%), Gaps = 51/397 (12%)

Query: 79  CLSRYQSVIYRRDSPHKPSPYLLSKLRNYEILHKNCGPYTESYNQTIKAINSANISSPTE 138
           CLSRYQS +YR++  HKPS YLLSKLR+YE LHK CGPYTESYN+T+K +        ++
Sbjct: 112 CLSRYQSALYRKELLHKPSSYLLSKLRSYEALHKRCGPYTESYNRTLKQLQLGQHMEQSD 171

Query: 139 CNYIVWTPLEGLGNRILTMASAFLYALLTNRVLLVEHETDMADLFCEPFPNTSWLLPQDY 198
           CNY+VW    GLGNRILT+ASAFLYA+LTNRVLLV+   DM DLFCEPFP  SWLLP D+
Sbjct: 172 CNYLVWISFSGLGNRILTLASAFLYAILTNRVLLVDPGADMPDLFCEPFPEVSWLLPLDF 231

Query: 199 PLKREFKKLNLNFPNKYGNMVRN-NITNVNKVSSPPFAYLFLAFNCDDSDKLFYCQEHQD 257
           PLK EF   +   P  YG M++N  +T+ +    PP+ YL L  + DD DK+F+C + Q 
Sbjct: 232 PLKNEFNSFDQKSPFCYGKMLKNKTLTDSSWSILPPYVYLHLVHDYDDHDKMFFCNQDQS 291

Query: 258 FLQKVPWLILKSDQYFIPFLFLIPSFEQELDKMFPDKETVFHFLSRYLFNPSNKAWGLIT 317
           FL+K+P LI+K+D YF+P LFLIPSFEQEL                              
Sbjct: 292 FLRKIPCLIIKTDNYFVPSLFLIPSFEQEL------------------------------ 321

Query: 318 RFYQSYLAKADQRIGMQIRIFNPKASSFQIVMDQILACTMQENLLPEVNKQE-LISKNRT 376
                              IF+     FQ V+DQI+ACTM ENLLPE+N +E ++S    
Sbjct: 322 -------------------IFDTGIGPFQHVLDQIIACTMTENLLPEINMREPVVSSYGH 362

Query: 377 SNSKAILIASLYTEFYESLKNMYWTFPTRNGEVIEVCQPSHEKHQQFGDNMHNLKAWVEM 436
             SKA+L+ SL   ++E ++NMYW  PT  GEVI V QPSHE++QQ     HN KAW EM
Sbjct: 363 KKSKAVLMTSLSAGYFEKVRNMYWEHPTVTGEVIGVYQPSHEEYQQTEKQNHNRKAWAEM 422

Query: 437 NLLSMSDVLVTSSWSTFGYVAQGLGGLKPWILYKPEN 473
            LLS++DVLVTSSWSTFGYVAQGLGGLKPWILYKPEN
Sbjct: 423 YLLSLTDVLVTSSWSTFGYVAQGLGGLKPWILYKPEN 459


>GSVIVT01003228001 assembled CDS
          Length = 474

 Score =  311 bits (796), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 149/240 (62%), Positives = 186/240 (77%)

Query: 79  CLSRYQSVIYRRDSPHKPSPYLLSKLRNYEILHKNCGPYTESYNQTIKAINSANISSPTE 138
           CLSRYQS +YR+ SP+KPS YLLS+LR YE LHK+CGP+T+SY +TIK + S +   PT+
Sbjct: 98  CLSRYQSALYRKISPYKPSSYLLSRLRKYEDLHKHCGPHTKSYRKTIKLLKSGHSVGPTD 157

Query: 139 CNYIVWTPLEGLGNRILTMASAFLYALLTNRVLLVEHETDMADLFCEPFPNTSWLLPQDY 198
           CNY+VW    GLGNRILT+ASAFLYALLTNRVLLV+   DMADLFCEPFP  SWLLP D+
Sbjct: 158 CNYVVWISYSGLGNRILTLASAFLYALLTNRVLLVDRGKDMADLFCEPFPEKSWLLPLDF 217

Query: 199 PLKREFKKLNLNFPNKYGNMVRNNITNVNKVSSPPFAYLFLAFNCDDSDKLFYCQEHQDF 258
           PL  +F  +N   P+ +G M++NNI N +    PPF Y++L+ +  D DKLF+C + Q  
Sbjct: 218 PLLPKFNSINKESPHCFGKMLKNNIINSSTEQPPPFLYIYLSHDYGDHDKLFFCDQEQTL 277

Query: 259 LQKVPWLILKSDQYFIPFLFLIPSFEQELDKMFPDKETVFHFLSRYLFNPSNKAWGLITR 318
           L KVPWLI+K++ YF+P LFL+PSFEQEL K+FP+KET FH L RYLF+PSN+ WGLITR
Sbjct: 278 LGKVPWLIMKTNNYFVPSLFLMPSFEQELSKLFPEKETTFHHLGRYLFHPSNQVWGLITR 337



 Score =  109 bits (272), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 49/78 (62%), Positives = 59/78 (75%)

Query: 396 KNMYWTFPTRNGEVIEVCQPSHEKHQQFGDNMHNLKAWVEMNLLSMSDVLVTSSWSTFGY 455
           +NMYW     +GEV+ V QPSHE+ QQ     HN KAW EM LLS ++ L+TS+WSTFGY
Sbjct: 337 RNMYWEQSAMSGEVVSVYQPSHEEVQQSEKQGHNRKAWAEMYLLSTTEALITSAWSTFGY 396

Query: 456 VAQGLGGLKPWILYKPEN 473
           VAQGLGG+ PWILYKP+N
Sbjct: 397 VAQGLGGVTPWILYKPQN 414