Jatropha Genome Database

JcCB0425721.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0425721.10 - phase: 0 /pseudo/partial
         (445 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01015181001 assembled CDS                                       583   e-167
GSVIVT01026274001 assembled CDS                                       216   2e-56
GSVIVT01033571001 assembled CDS                                       136   2e-32

>GSVIVT01015181001 assembled CDS
          Length = 584

 Score =  583 bits (1504), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 288/437 (65%), Positives = 351/437 (80%), Gaps = 8/437 (1%)

Query: 1   MDNRIGFSDSNEISNGSSTCCI----ETLSTPNPPNPEISALQQLSKSLESIXXXXXXXX 56
           MD R   SDSN+ S  SS CCI    E+LS+   P P+ISAL++LS++LES+        
Sbjct: 1   MDYRAALSDSNDFSGSSSICCIAATTESLSSEVSP-PDISALRRLSENLESVFESPEFDF 59

Query: 57  XXXXKITISASNREVPVHRCILSARSPFFKAVFSGSAAKEKGQNFEVKELAKDYDIGFDS 116
               +I + A  REVPVHRCIL+ARS FFKAV +G A KEK   FE+K+LAK++D+G+DS
Sbjct: 60  FTDARIVV-AGGREVPVHRCILAARSVFFKAVLAG-ARKEKEAKFELKDLAKEFDVGYDS 117

Query: 117 IVTVLSYLYNGKVRPLPKGVCVCVDEDCSHVACRPAVDFMVEVLYAAFTFQVPELVALYQ 176
           +V VL YLY+G+V  LPKGVC CVD+DC H ACRPAVDFMVEVLYA+F FQ+ ELV LYQ
Sbjct: 118 LVAVLGYLYSGRVGALPKGVCACVDDDCPHSACRPAVDFMVEVLYASFAFQISELVGLYQ 177

Query: 177 RHLLDILEKVAIDDILVVLSVANICGKACEKLLTRCIEIVVKSYVDIVTLDKALPQNIVK 236
           R L+DIL+KVA DDILV+LSVAN+CGKAC++LL RCI+I++KS VD+VTL++ALPQ +VK
Sbjct: 178 RRLMDILDKVASDDILVILSVANLCGKACDRLLARCIDIIIKSDVDVVTLERALPQEMVK 237

Query: 237 QITDSRLEIASDTPQTTSYPDKHIKRIHRALDSDDVELVRMLLKEAHTNLDDAHALHYAV 296
           QI DSRLE+  + P++T++PDKH+KRIHRALDSDDVELVRMLLKE HT LDDA+ALHYAV
Sbjct: 238 QIVDSRLELGFEEPESTNFPDKHVKRIHRALDSDDVELVRMLLKEGHTTLDDAYALHYAV 297

Query: 297 AYCDAKTTTELLDLGIADVNCRNLRGYTVLHVAAMRKEPKIIVSLLTKGARPSDLTSDGR 356
           A+ DAKTTTELLDLG+ADVN +N RGYTVLH+AAMRKEPKIIVSLLTKGARP+D+T DGR
Sbjct: 298 AFGDAKTTTELLDLGLADVNHKNHRGYTVLHIAAMRKEPKIIVSLLTKGARPTDITPDGR 357

Query: 357 KALQISKRLTRASDYYKSIEEGKASPKERLCIEILEQAERRDPLLGEA-FSFSCYGWRLD 415
            ALQI+KRLTRA DY+KS EEGK SPK++LC+E+LEQAERRDPL+GEA FS +  G  L 
Sbjct: 358 NALQIAKRLTRAVDYHKSTEEGKPSPKDQLCVEVLEQAERRDPLIGEASFSLAIAGDDLR 417

Query: 416 WQKFYSPWKQKLQWILL 432
            +  Y   +  L  +L 
Sbjct: 418 MKLLYLENRVGLAKLLF 434


>GSVIVT01026274001 assembled CDS
          Length = 421

 Score =  216 bits (550), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 123/248 (49%), Positives = 174/248 (70%), Gaps = 6/248 (2%)

Query: 160 LYAAFTFQVPELVALYQRHLLDILEKVAIDDILVVLSVANICGKACEKLLTRCIEIVVKS 219
           +YA+  FQVPELV+L+QR L + + K  ++D++ +L VA  C  +   L+ +C++ V +S
Sbjct: 1   MYASAIFQVPELVSLFQRRLTNFIGKALLEDVIPILVVAYHCKSSV--LVNQCVDRVARS 58

Query: 220 YVDIVTLDKALPQNIVKQITDSRLEIASDTPQTTSYPD----KHIKRIHRALDSDDVELV 275
            +D ++L+K LP  + + I   RL+   D    T   D    K ++RI +ALDSDDVELV
Sbjct: 59  DLDSISLEKDLPYEVAESIKLLRLKSQPDDECNTVPVDPVHEKRVRRILKALDSDDVELV 118

Query: 276 RMLLKEAHTNLDDAHALHYAVAYCDAKTTTELLDLGIADVNCRNLRGYTVLHVAAMRKEP 335
           ++LL E+   LD+A+ALHYA AYCD K  +E+L LG+ADVN  N RGYTVLHVAAMRKEP
Sbjct: 119 KLLLSESGITLDEAYALHYAAAYCDPKVVSEVLSLGLADVNRHNPRGYTVLHVAAMRKEP 178

Query: 336 KIIVSLLTKGARPSDLTSDGRKALQISKRLTRASDYYKSIEEGKASPKERLCIEILEQAE 395
            IIVSLLTKGA  S+ TSDG+ A+ I +RLTR  DY+  +E+G+ + K+R+CI++LE+  
Sbjct: 179 SIIVSLLTKGAHASERTSDGQSAVSICRRLTRPKDYHAKMEQGQETNKDRICIDVLEREM 238

Query: 396 RRDPLLGE 403
           RR+PL G+
Sbjct: 239 RRNPLAGD 246


>GSVIVT01033571001 assembled CDS
          Length = 399

 Score =  136 bits (343), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 102/293 (34%), Positives = 152/293 (51%), Gaps = 25/293 (8%)

Query: 123 YLYNGKVRPLPKG---VCVCVDEDCSHVACRPAVDFMVEVLYAAFTFQVPELVALYQRHL 179
           +LY+G+V  +P+       C +  C H  C  AVD  ++ L AA +F V +L  L Q+ L
Sbjct: 36  FLYSGQVSIVPQKHEPRPNCGERGCWHTHCTSAVDLALDTLAAARSFGVEQLALLTQKQL 95

Query: 180 LDILEKVAIDDILVVLSVANICGKACEKLLTRCIEIVVKSYVDIVTLDKALPQNIVKQIT 239
             ++EK +I+D++ VL  +    +   +L T C  +V KS +    L K LP ++V +I 
Sbjct: 96  ASMVEKASIEDVMKVLIASR--KQDMHQLWTTCSHLVAKSGLPPEVLAKHLPIDVVAKIE 153

Query: 240 DSRLEIA-------------SDTPQTTSYPDKHIKRIHRALDSDDVELVRMLLKEAHTNL 286
           + RL+ +              D        D+ I+R+ RALDS DVELV++++     NL
Sbjct: 154 ELRLKSSLARRSLMPHHHHHQDIGAAADLEDQKIRRMRRALDSSDVELVKLMVMGEGLNL 213

Query: 287 DDAHALHYAVAYCDAKTTTELLDLGIADVNC-RNLRGYTVLHVAAMRKEPKIIVSLLTKG 345
           D+A ALHYAV  C  +    LL+LG ADVN      G T LH+AA    P ++  LL   
Sbjct: 214 DEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHH 273

Query: 346 ARPSDLTSDGRKALQISKRLTRASDY-YKSIEEG--KASP-KERLCIEILEQA 394
           A P+  T DG   L + + LT  SD+ +K    G     P K RLC+E+++ A
Sbjct: 274 ADPNVRTVDGVTPLDVLRTLT--SDFLFKGAVPGLTHIEPNKLRLCLELVQSA 324