Jatropha Genome Database

JcCB0425521.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0425521.10 + phase: 0 /partial
         (418 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01033746001 assembled CDS                                       302   2e-82
GSVIVT01034521001 assembled CDS                                       152   3e-37
GSVIVT01025297001 assembled CDS                                        77   2e-14

>GSVIVT01033746001 assembled CDS
          Length = 410

 Score =  302 bits (773), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 149/191 (78%), Positives = 162/191 (84%), Gaps = 5/191 (2%)

Query: 3   LTKPKPQSPPSDEDE-HFIGDDVTSDGKRKMSPWQRMKWTDSMVRLLIMAVFYIGDEAGS 61
           +TK K Q   SDEDE    GDD T+DGKRK+SPW RMKWTD+MVRLLIMAVFYIGDE GS
Sbjct: 60  VTKAKQQLTLSDEDEPGLTGDDSTADGKRKVSPWHRMKWTDNMVRLLIMAVFYIGDEGGS 119

Query: 62  EVNDPTGKKKAGGLSQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNDILGK 121
           E +DP+ KKK GGL QKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNDILGK
Sbjct: 120 ECSDPSAKKKTGGLLQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNDILGK 179

Query: 122 GTACKVVENQSLLETMD-LSPKMKEEVKKLLNSKHLFFREMCAYHNSCGHGSSGVASGTT 180
           GTAC+VVENQSLL+TMD LSPKMK+EV+KLLNSKHLFFREMCAYHNSCG G +   SG  
Sbjct: 180 GTACRVVENQSLLDTMDQLSPKMKDEVRKLLNSKHLFFREMCAYHNSCGGGGT---SGAH 236

Query: 181 NHSPEVATDQS 191
              P+ AT+ S
Sbjct: 237 PSPPDTATEAS 247



 Score = 97.8 bits (242), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 55/105 (52%), Positives = 63/105 (60%), Gaps = 2/105 (1%)

Query: 287 KRQRTGIFAXXXXX--XXXXXXXXXXXIQDGAKSPWEKKHWMKVRLMELEEQQVSYQRQA 344
           KR R G+F                   +QDG KS  EKK WM+ R+M+LEEQ+VSYQ +A
Sbjct: 253 KRARKGLFPSPSPSPLMRQLSSEVMSVLQDGTKSTLEKKQWMRSRMMQLEEQRVSYQCKA 312

Query: 345 LELEKQRLKWVKFSSKKEREMERAKXXXXXXXXXXXXMVLLVRQK 389
            ELEKQRLKWVKFSSKKEREMER K            M LL+RQK
Sbjct: 313 FELEKQRLKWVKFSSKKEREMEREKLVNQRKRLENERMALLLRQK 357


>GSVIVT01034521001 assembled CDS
          Length = 361

 Score =  152 bits (384), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 71/106 (66%), Positives = 88/106 (83%), Gaps = 3/106 (2%)

Query: 64  NDPTGKKKA--GGLSQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNDILGK 121
           NDP   KK     + QKKGKWKSVS+ M E+G YVSPQQCEDKFNDLNKRYKR+ND+LG+
Sbjct: 97  NDPNRGKKGRKYAILQKKGKWKSVSKVMAERGHYVSPQQCEDKFNDLNKRYKRLNDVLGR 156

Query: 122 GTACKVVENQSLLETMD-LSPKMKEEVKKLLNSKHLFFREMCAYHN 166
           GT+C+VVEN +LL+ MD L+ K KE+V+K+L+SKHLF+ EMC+YHN
Sbjct: 157 GTSCQVVENPALLDMMDHLTEKTKEDVRKILSSKHLFYEEMCSYHN 202



 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 44/75 (58%)

Query: 315 GAKSPWEKKHWMKVRLMELEEQQVSYQRQALELEKQRLKWVKFSSKKEREMERAKXXXXX 374
           G+     +K WM+ R ++LEEQ++  Q Q LELEKQR KW +F  KK+R++++ +     
Sbjct: 280 GSAEDLLQKQWMRSRSLQLEEQKLQIQEQMLELEKQRFKWQRFCRKKDRDLDKLRMENER 339

Query: 375 XXXXXXXMVLLVRQK 389
                  M L +++K
Sbjct: 340 MKLENERMALELKRK 354


>GSVIVT01025297001 assembled CDS
          Length = 205

 Score = 76.6 bits (187), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 35/78 (44%), Positives = 52/78 (66%)

Query: 312 IQDGAKSPWEKKHWMKVRLMELEEQQVSYQRQALELEKQRLKWVKFSSKKEREMERAKXX 371
            +D AKSPWE+K W+K R+++L+EQ V+   Q  ELEKQR KW++FSSKK R++E ++  
Sbjct: 77  FEDPAKSPWEQKEWIKNRMLQLQEQMVTIMAQGFELEKQRFKWLRFSSKKGRDLEDSRLE 136

Query: 372 XXXXXXXXXXMVLLVRQK 389
                     +VL ++QK
Sbjct: 137 NERMGLENERLVLELKQK 154