Jatropha Genome Database

JcCB0424661.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0424661.10 + phase: 2 /pseudo/partial
         (338 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01012510001 assembled CDS                                       347   3e-96
GSVIVT01007764001 assembled CDS                                       126   2e-29

>GSVIVT01012510001 assembled CDS
          Length = 702

 Score =  347 bits (891), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 183/312 (58%), Positives = 219/312 (70%), Gaps = 1/312 (0%)

Query: 27  LNPPGPTEGKSDLFVVXXXXXXXXXXXXXXXXLAEGLPGFQNILRDMIPGMKLKVLKVTT 86
           LNP    EGKSDL                    AEGL GF+NILRDMIPG+K+KVLKVT 
Sbjct: 306 LNPLDLAEGKSDLLATSIEDSEDEDRDGDSDA-AEGLSGFRNILRDMIPGVKVKVLKVTA 364

Query: 87  PAKVDKDFISKVIXXXXXXXXXXXXXXXXXXXGDDELGSESDQXXXXXXXXXXXXXXXSE 146
           P KVD+D ISKVI                    ++E+  ESDQ                E
Sbjct: 365 PGKVDRDLISKVIEQIMEEEEDEQDIELESVETEEEVKVESDQEQDEIEMEAGHGIIDRE 424

Query: 147 GPSEISFKVVVGGLAQKFSGSMPVKESLRVPAKLEKKGRRSFLFSIEKDVNQQDSGAKEA 206
             +EI+ KV VGGL QK S  +P K+ LRVPA+LEKKGR SF FSIE+D N++D+G K  
Sbjct: 425 EQNEIAVKVFVGGLVQKLSAGVPSKKLLRVPARLEKKGRMSFSFSIERDDNRKDNGGKGQ 484

Query: 207 ASADRKAKFQGQRSVDNIMLDLAKFIGKEKIPLKVLKDVGDLINFTLSQAQNRQPLSGST 266
           AS D+KAK +GQRS+D++M DLAKFIG+EKIP+KVLKDVG+LIN TLSQA NRQPLSGST
Sbjct: 485 ASLDKKAKLRGQRSIDHVMFDLAKFIGREKIPMKVLKDVGELINLTLSQAHNRQPLSGST 544

Query: 267 TFHRIEISASPDPLNGLYIGAHGLYSSEVIQLQRKFGQWQDERGTNQPSNVEFYEYVEAV 326
           TF+RIEI ASPDPLNGLYIG+HGLY+SE+I L+RKFGQW+++ G  +PSN+EFYEYVEA+
Sbjct: 545 TFNRIEIPASPDPLNGLYIGSHGLYTSEIIHLRRKFGQWKEDAGAKEPSNLEFYEYVEAL 604

Query: 327 KLTGDPYIAAGQ 338
           KLTGDPY+ AGQ
Sbjct: 605 KLTGDPYVPAGQ 616


>GSVIVT01007764001 assembled CDS
          Length = 656

 Score =  126 bits (316), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 89/283 (31%), Positives = 137/283 (48%), Gaps = 16/283 (5%)

Query: 61  EGLPGFQNILRDMIPGMKLKVLKVTTPAKV--DKDFISKVIXXXXXXXXXXXXXXXXXXX 118
           EG+    N L+D IP +K+KV+K+  P +V  D D + + +                   
Sbjct: 296 EGIKSVINFLKDKIPELKVKVMKINVPDEVIEDGDSVKQFMQEDDEKTQSSE-------- 347

Query: 119 GDDELGSESDQXXXXXXXXXXXXXXXSEGPSEISFKVVVGGLAQKFSGSMPVKESLRVPA 178
            D E  ++                  +E    +  K+ +GG+      +    + +R PA
Sbjct: 348 -DSEDEADDLDKIQPDEVALGGGSNTAEDGQNLDMKLFIGGVLHNKEDTSSKDDYVRQPA 406

Query: 179 KLEKKGRRSFLFSIEKDVNQQDSGAKEAASADRKAKFQGQRSVDNIM-LDLAK-FIGKEK 236
           ++    R SF+  +   V  QD    E   +  K      + +  +M  ++AK F   +K
Sbjct: 407 EIRDMERDSFVLHVP--VRSQDHDIGENKVSKVKVAAIAAQGISELMPSEVAKAFWSADK 464

Query: 237 IPLKVLKDVGDLINFTLSQAQNRQPLSGSTTFHRIEIS-ASPDPLNGLYIGAHGLYSSEV 295
           +  KV +DV +++   +SQAQ R  LS  T+F RI  S  S DP +GLY+GA G Y +EV
Sbjct: 465 VSPKVSRDVREIVKLAVSQAQKRNRLSEHTSFSRITTSKGSLDPFDGLYVGAFGPYGTEV 524

Query: 296 IQLQRKFGQWQDERGTNQPSNVEFYEYVEAVKLTGDPYIAAGQ 338
           +QL+ KFG W      ++ S+VEF+EYVEAVKLTGD  + AGQ
Sbjct: 525 VQLRCKFGNWNGGDDNDKSSDVEFFEYVEAVKLTGDLNVPAGQ 567