Jatropha Genome Database

JcCB0424591.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0424591.10 - phase: 0 /partial
         (111 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01034739001 assembled CDS                                       107   8e-25
GSVIVT01033798001 assembled CDS                                        96   3e-21
GSVIVT01031383001 assembled CDS                                        92   4e-20

>GSVIVT01034739001 assembled CDS
          Length = 193

 Score =  107 bits (268), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 52/82 (63%), Positives = 60/82 (73%)

Query: 27  SRFAISTFQAXXXXXXXXXXXXXXXXXLQLGRAEEETRRLTQIWEELEVMCDPMRKEVAM 86
           +R AIST Q+                 LQL RAEEETRRL QIWEELEV+ DP+RKEVA+
Sbjct: 61  TRSAISTLQSREEEIERKKMEVRQKVELQLSRAEEETRRLAQIWEELEVLADPLRKEVAV 120

Query: 87  VRKKIDLANRELKPLGQSCQKK 108
           VRKKID+ANR++KPLGQSCQKK
Sbjct: 121 VRKKIDMANRDIKPLGQSCQKK 142


>GSVIVT01033798001 assembled CDS
          Length = 134

 Score = 95.9 bits (237), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 49/82 (59%), Positives = 55/82 (67%)

Query: 27  SRFAISTFQAXXXXXXXXXXXXXXXXXLQLGRAEEETRRLTQIWEELEVMCDPMRKEVAM 86
           S+ A+STF+A                 +QLGR EEETRRL  I EELE + DPMRKEVA 
Sbjct: 2   SKSALSTFRAKEEEIEKKKLEVREKVQVQLGRVEEETRRLATIREELEALADPMRKEVAQ 61

Query: 87  VRKKIDLANRELKPLGQSCQKK 108
           VRKKID  NR+LKPLGQSCQKK
Sbjct: 62  VRKKIDSVNRDLKPLGQSCQKK 83


>GSVIVT01031383001 assembled CDS
          Length = 172

 Score = 92.0 bits (227), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 45/82 (54%), Positives = 54/82 (65%)

Query: 27  SRFAISTFQAXXXXXXXXXXXXXXXXXLQLGRAEEETRRLTQIWEELEVMCDPMRKEVAM 86
           SR A+S F+A                  QLGR EEET+RL +I EELE + DPMRKEVA+
Sbjct: 40  SRSALSAFRAKEEEIERKKMEVRERVQAQLGRVEEETKRLAEIREELEALSDPMRKEVAI 99

Query: 87  VRKKIDLANRELKPLGQSCQKK 108
           +RK+ID  NREL+PLGQ CQKK
Sbjct: 100 IRKRIDAVNRELRPLGQGCQKK 121