Jatropha Genome Database

JcCB0424221.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0424221.20 - phase: 2 /partial
         (95 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01010300001 assembled CDS                                        89   3e-19

>GSVIVT01010300001 assembled CDS
          Length = 594

 Score = 89.4 bits (220), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 45/93 (48%), Positives = 59/93 (63%)

Query: 3   TMKSQSFNLSCVSDFESSQKSINWGMHPSTTLDDDFQVCWFQGDCYAMNLGLHNIELPEY 62
            M++Q  N S V+D ES Q+++  G   +    +D QV W QGDC  MNLGL NIE  +Y
Sbjct: 495 NMRNQGHNQSGVNDLESFQRNLISGSGSALESLEDLQVHWLQGDCNPMNLGLRNIEFSDY 554

Query: 63  CDPGLITEVPTHLHDAVRFDYENLYDPTEYALI 95
            D  LITEVP HL+D ++ DYE L D TEY ++
Sbjct: 555 HDQKLITEVPFHLYDPLKLDYEYLSDLTEYPIM 587