Jatropha Genome Database

JcCB0424221.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0424221.10 + phase: 0 /pseudo/partial
         (139 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01010301001 assembled CDS                                        57   2e-09

>GSVIVT01010301001 assembled CDS
          Length = 621

 Score = 57.4 bits (137), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/75 (45%), Positives = 46/75 (61%), Gaps = 7/75 (9%)

Query: 64  HVKSKIPLTRPRSPKLGRKPSSYMVQEASFQHPQRPSVNAESSKRVVPKGNQSTTHSITL 123
           H+K K P TRPRSPKLGRKP+   VQ+ + + P+ PS   +SS +   + N+       L
Sbjct: 553 HIK-KTPPTRPRSPKLGRKPTPNAVQDTNSRPPRVPSSRTDSSNKPATEKNK------LL 605

Query: 124 LTRKKAHENASPNIQ 138
           L +  + ENASPNIQ
Sbjct: 606 LPKNNSQENASPNIQ 620