Jatropha Genome Database

JcCB0424111.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0424111.10 + phase: 2 /partial
         (103 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01035016001 assembled CDS                                       180   1e-46

>GSVIVT01035016001 assembled CDS
          Length = 114

 Score =  180 bits (456), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 84/104 (80%), Positives = 94/104 (90%), Gaps = 1/104 (0%)

Query: 1   NNILYPKEDKKQRILLYACRNCDHQEVADNNRVYRNEVQHSVTEFTQILQDVASDPTLPR 60
           NNILYPKED++Q+ILLYACRNCDHQEVA+NN VYRNE+ HSV E TQ+LQDVA+DPTLPR
Sbjct: 11  NNILYPKEDREQKILLYACRNCDHQEVAENNCVYRNEIHHSVGERTQVLQDVAADPTLPR 70

Query: 61  TKSVRCSACGHGEAVFLQATSR-EEGFTLFYVCCNPNCGNRWRD 103
           TKSVRC+ C HGEAVF QAT+R EEG TLF+VCCNPNCG RWRD
Sbjct: 71  TKSVRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGYRWRD 114