Jatropha Genome Database

JcCB0423721.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0423721.10 + phase: 0 /partial
         (162 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01033319001 assembled CDS                                        95   1e-20

>GSVIVT01033319001 assembled CDS
          Length = 1112

 Score = 95.1 bits (235), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 56/132 (42%), Positives = 73/132 (55%), Gaps = 1/132 (0%)

Query: 8   ISGMQYYTDSHAEGITENKDAGVETXXXXXXXXXXXXXXXXXXKFESIMSEYGMQISRIL 67
           +S +Q+YTDS ++  T+N D G+ T                  + E  ++EYGM+IS  L
Sbjct: 359 LSAIQFYTDSDSKQHTKNTDTGIATRKFFLNCLSLLLGRLDGKQIERTVTEYGMKISCAL 418

Query: 68  LSQLHCADEDXXXXXXCILKKSIFKPNY-SSGKDLTDSRQMDVXXXXXXXXXDENDGIAR 126
           + QL C DED      CI K  IFK NY SS   L+D+RQMD          DE DG A+
Sbjct: 419 IPQLCCTDEDVIDGVVCIFKTVIFKMNYSSSRSSLSDTRQMDSVLPLLLPLLDERDGTAK 478

Query: 127 AVVMLIAEYCSM 138
           AVVML+AEYCS+
Sbjct: 479 AVVMLVAEYCSI 490