Jatropha Genome Database

JcCB0423521.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0423521.10 + phase: 0 /partial
         (148 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01024086001 assembled CDS                                       274   1e-74
GSVIVT01024952001 assembled CDS                                       197   2e-51
GSVIVT01016559001 assembled CDS                                       187   1e-48

>GSVIVT01024086001 assembled CDS
          Length = 256

 Score =  274 bits (700), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 133/148 (89%), Positives = 141/148 (95%)

Query: 1   FIGKKAAYALSEGLGVIACIGELLEEREAGKTFDVCFQQLKAYADAVPSWDKIVIAYEPV 60
           FIGKKAAYALS+GL VIACIGELL+EREAGKTFDVCFQQ+KA+ADAVPSWD +VIAYEPV
Sbjct: 109 FIGKKAAYALSQGLKVIACIGELLQEREAGKTFDVCFQQMKAFADAVPSWDDVVIAYEPV 168

Query: 61  WAIGTGKVATPQQAQEVHVALRDWLKKNVSEAVASKTRIIYGGSVNGGNCAELAKQEDID 120
           WAIGTGKVATP QAQEVH+A+RDWLKKNVS  VASKTRIIYGGSVNG NC+ELAKQEDID
Sbjct: 169 WAIGTGKVATPLQAQEVHIAVRDWLKKNVSAEVASKTRIIYGGSVNGSNCSELAKQEDID 228

Query: 121 GFLVGGASLKGPEFATIVNSVTSKKVAA 148
           GFLVGGASLKGPEFA IVNSVTSKKVAA
Sbjct: 229 GFLVGGASLKGPEFAVIVNSVTSKKVAA 256


>GSVIVT01024952001 assembled CDS
          Length = 254

 Score =  197 bits (500), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 99/147 (67%), Positives = 110/147 (74%), Gaps = 1/147 (0%)

Query: 1   FIGKKAAYALSEGLGVIACIGELLEEREAGKTFDVCFQQLKAYADAVPSWDKIVIAYEPV 60
           F+G K AYALS+GL VIAC+GE LE+RE+G T  V   Q KA A+ V SWD IV+AYEPV
Sbjct: 109 FVGDKVAYALSQGLKVIACVGETLEQRESGSTMAVVAAQTKAIAEKVSSWDNIVLAYEPV 168

Query: 61  WAIGTGKVATPQQAQEVHVALRDWLKKNVSEAVASKTRIIYGGSVNGGNCAELAKQEDID 120
           WAIGTGKVATP QAQEVH  LR WL  N  + VA+ TRIIYGGSVNG NC EL  Q D+D
Sbjct: 169 WAIGTGKVATPAQAQEVHCELRKWLHDNAGDEVAASTRIIYGGSVNGANCKELTTQLDVD 228

Query: 121 GFLVGGASLKGPEFATIVNSVTSKKVA 147
           GFLVGGASLK PEF  I+ S T KK A
Sbjct: 229 GFLVGGASLK-PEFIDIIKSATVKKSA 254


>GSVIVT01016559001 assembled CDS
          Length = 254

 Score =  187 bits (476), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 93/145 (64%), Positives = 110/145 (75%), Gaps = 1/145 (0%)

Query: 1   FIGKKAAYALSEGLGVIACIGELLEEREAGKTFDVCFQQLKAYADAVPSWDKIVIAYEPV 60
           F+G+K AYALS+GL VIAC+GE LE+RE+G T +V   Q KA AD V +W  +V+AYEPV
Sbjct: 109 FVGEKVAYALSKGLKVIACVGETLEQRESGSTMEVVAAQTKAIADKVSNWANVVLAYEPV 168

Query: 61  WAIGTGKVATPQQAQEVHVALRDWLKKNVSEAVASKTRIIYGGSVNGGNCAELAKQEDID 120
           WAIGTGKVATP QAQEVH  LR+W + N S  VA+  RIIYGGSV+G NC ELA + D+D
Sbjct: 169 WAIGTGKVATPAQAQEVHSELRNWFQANASPEVAATIRIIYGGSVSGANCKELAAKPDVD 228

Query: 121 GFLVGGASLKGPEFATIVNSVTSKK 145
           GFLVGGASLK PEF  I+ S   KK
Sbjct: 229 GFLVGGASLK-PEFIDIIKSAEVKK 252