Jatropha Genome Database

JcCB0421511.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0421511.10 + phase: 1 /pseudo/partial
         (162 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01008562001 assembled CDS                                       130   3e-31
GSVIVT01022373001 assembled CDS                                        82   1e-16

>GSVIVT01008562001 assembled CDS
          Length = 541

 Score =  130 bits (327), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 62/84 (73%), Positives = 71/84 (84%)

Query: 28  LVLKLKTRRAGCTVFTCDTRSLTDLITSILQRLGDDIDRNNLPQILYEDEDHDKVVLESD 87
              K++ +R     FTCDTRSLTD+ITSILQR+GDDIDRNNLPQILYEDEDHDKVVL SD
Sbjct: 407 FAFKIEDKRGRMHRFTCDTRSLTDVITSILQRVGDDIDRNNLPQILYEDEDHDKVVLASD 466

Query: 88  SDLVTAVDHAKSAGLKGLRLHLDY 111
           +DLV A++HA+ AG KGLRLHLDY
Sbjct: 467 NDLVAAMEHARLAGWKGLRLHLDY 490


>GSVIVT01022373001 assembled CDS
          Length = 556

 Score = 82.0 bits (201), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/70 (54%), Positives = 53/70 (75%), Gaps = 1/70 (1%)

Query: 42  FTCDTRSLTDLITSILQRLGDDIDRNNLPQILYEDEDHDKVVLESDSDLVTAVDHAKSAG 101
           F C T SL +L+++++QR+G   D++  PQILYED++ DKV+L +DSDLV+AV HA+  G
Sbjct: 438 FNCGTESLDELVSAVMQRIGASTDQDR-PQILYEDDEGDKVLLSTDSDLVSAVSHARVVG 496

Query: 102 LKGLRLHLDY 111
            K LRL LDY
Sbjct: 497 QKVLRLQLDY 506