Jatropha Genome Database

JcCB0420431.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0420431.10 + phase: 2 /partial
         (112 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01023275001 assembled CDS                                       100   1e-22

>GSVIVT01023275001 assembled CDS
          Length = 376

 Score =  100 bits (249), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 46/66 (69%), Positives = 52/66 (78%)

Query: 47  VFCCIXXXXXXXXXXXXXTRASERNEIRLGLPSKGRMASDTIDLLKDCQLSVKQVNPRQY 106
           VFCC+              R+SERNEIRLGLPSKGRMA+DT+DLLKDCQLSV+QVNPRQY
Sbjct: 17  VFCCLSPSPVTVVNGNTERRSSERNEIRLGLPSKGRMATDTLDLLKDCQLSVRQVNPRQY 76

Query: 107 VAQIPQ 112
           VA+IPQ
Sbjct: 77  VAEIPQ 82