Jatropha Genome Database

JcCB0418191.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0418191.10 + phase: 0 /pseudo/partial
         (166 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01001692001 assembled CDS                                       160   2e-40

>GSVIVT01001692001 assembled CDS
          Length = 546

 Score =  160 bits (406), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 78/95 (82%), Positives = 83/95 (87%)

Query: 30  QNSEAMISIDMPAGPSEVLVIADKHASPVHIAADLLSQAEHGPDSQXXXXXXXXXXXXKA 89
           QNSEAM+SIDMPAGPSEVLVIADKHA+PVHIAADLLSQAEHGPDSQ            +A
Sbjct: 328 QNSEAMVSIDMPAGPSEVLVIADKHANPVHIAADLLSQAEHGPDSQVVLVIAGDGVDLRA 387

Query: 90  IEEEISKQCQSLPRGEYASKALSHSFTVFARDMVE 124
           IEEEISKQCQSLPRGE+ASKALSHSFTVFAR+MVE
Sbjct: 388 IEEEISKQCQSLPRGEFASKALSHSFTVFARNMVE 422