Jatropha Genome Database

JcCB0418081.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0418081.10 - phase: 0 /partial
         (108 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01020703001 assembled CDS                                       107   1e-24
GSVIVT01020702001 assembled CDS                                       100   2e-22
GSVIVT01003195001 assembled CDS                                        67   1e-12
GSVIVT01003197001 assembled CDS                                        67   1e-12

>GSVIVT01020703001 assembled CDS
          Length = 393

 Score =  107 bits (267), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 53/108 (49%), Positives = 76/108 (70%), Gaps = 4/108 (3%)

Query: 3   IQPLPFGALIPASMETLSNS---ESCNGESKVYAVILDLDGTLLDTESATKGVLKEFLAK 59
           +  +P   + P+S  +  N      C+G + + AVI DLDGTLLDTE  TK VLKEFL K
Sbjct: 9   LNSIPLKPISPSSSLSAMNGCCGPQCDGAAHIQAVIFDLDGTLLDTEKVTKNVLKEFLEK 68

Query: 60  YGKELDKEREESKRLGMTLQDSAVAIVKDYGLPLTPDQFIHEIMPMYR 107
           YGK +D+E+E++ RLG++  ++A+A++K+Y LPLTP QFI EI P+Y+
Sbjct: 69  YGKVIDREQEDT-RLGISQLEAAIAVIKEYDLPLTPQQFIDEISPIYK 115


>GSVIVT01020702001 assembled CDS
          Length = 369

 Score =  100 bits (248), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 49/83 (59%), Positives = 61/83 (73%), Gaps = 1/83 (1%)

Query: 25  CNGESKVYAVILDLDGTLLDTESATKGVLKEFLAKYGKELDKEREESKRLGMTLQDSAVA 84
           C   S++ AVI DLDGTLLDTE  TK  LKEFL  +GK LD E E+ KRLGM  Q+SA+ 
Sbjct: 9   CAVASRIQAVIFDLDGTLLDTEKFTKSTLKEFLENHGKVLDSENED-KRLGMGPQESAID 67

Query: 85  IVKDYGLPLTPDQFIHEIMPMYR 107
           ++K+Y LPLTP QF  EI+P+Y+
Sbjct: 68  VIKEYDLPLTPQQFFDEIIPIYK 90


>GSVIVT01003195001 assembled CDS
          Length = 388

 Score = 67.4 bits (163), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 36/78 (46%), Positives = 50/78 (64%), Gaps = 1/78 (1%)

Query: 31  VYAVILDLDGTLLDTESATKGVLKEFLAKYGKELDKEREESKRLGMTLQDSAVAIVKDYG 90
           V  VILDLDGTLL+T+     VLK FL KY K+ +  +   K +G T  ++A  IV+DYG
Sbjct: 11  VSGVILDLDGTLLNTDGIVSEVLKVFLVKYEKQWNG-KVAHKLIGKTPFEAAAVIVEDYG 69

Query: 91  LPLTPDQFIHEIMPMYRH 108
           LP T ++ + EI PM+ +
Sbjct: 70  LPCTTEELMSEITPMFSN 87


>GSVIVT01003197001 assembled CDS
          Length = 388

 Score = 67.4 bits (163), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 36/78 (46%), Positives = 50/78 (64%), Gaps = 1/78 (1%)

Query: 31  VYAVILDLDGTLLDTESATKGVLKEFLAKYGKELDKEREESKRLGMTLQDSAVAIVKDYG 90
           V  VILDLDGTLL+T+     VLK FL KY K+ +  +   K +G T  ++A  IV+DYG
Sbjct: 11  VSGVILDLDGTLLNTDGIVSEVLKVFLVKYEKQWNG-KVAHKLIGKTPFEAAAVIVEDYG 69

Query: 91  LPLTPDQFIHEIMPMYRH 108
           LP T ++ + EI PM+ +
Sbjct: 70  LPCTTEELMSEITPMFSN 87