Jatropha Genome Database

JcCB0417241.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0417241.10 + phase: 0 
         (145 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01032155001 assembled CDS                                        53   5e-08
GSVIVT01033285001 assembled CDS                                        51   2e-07

>GSVIVT01032155001 assembled CDS
          Length = 421

 Score = 52.8 bits (125), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 25/32 (78%), Positives = 28/32 (87%)

Query: 1   MSKAGAFDLASGLGGKIEKTEVLSAVEKYSLF 32
           MSKAGA DLASG+GGKI+K EVLSAVEKY  +
Sbjct: 69  MSKAGALDLASGVGGKIQKDEVLSAVEKYEKY 100


>GSVIVT01033285001 assembled CDS
          Length = 343

 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 23/32 (71%), Positives = 28/32 (87%)

Query: 1  MSKAGAFDLASGLGGKIEKTEVLSAVEKYSLF 32
          MS++GA DLASG+GGKIEK EVLSAV+KY  +
Sbjct: 1  MSRSGALDLASGVGGKIEKNEVLSAVQKYEKY 32