Jatropha Genome Database

JcCB0417211.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0417211.10 - phase: 0 /pseudo/partial/short
         (34 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01008561001 assembled CDS                                        55   5e-09
GSVIVT01033068001 assembled CDS                                        54   1e-08
GSVIVT01033069001 assembled CDS                                        49   6e-07
GSVIVT01033074001 assembled CDS                                        46   3e-06

>GSVIVT01008561001 assembled CDS
          Length = 138

 Score = 55.5 bits (132), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 25/29 (86%), Positives = 28/29 (96%)

Query: 1  MADWGPVIVAVVLFVLLTPGLLFQIPGKG 29
          MADWGPV++AVVLFVLLTPGLLFQ+PGK 
Sbjct: 22 MADWGPVLIAVVLFVLLTPGLLFQVPGKN 50


>GSVIVT01033068001 assembled CDS
          Length = 69

 Score = 53.9 bits (128), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 24/29 (82%), Positives = 27/29 (93%)

Query: 1  MADWGPVIVAVVLFVLLTPGLLFQIPGKG 29
          MADWGPV++AVVLFVLLTPGLLFQ+PG  
Sbjct: 1  MADWGPVVIAVVLFVLLTPGLLFQLPGNN 29


>GSVIVT01033069001 assembled CDS
          Length = 80

 Score = 48.5 bits (114), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 20/27 (74%), Positives = 26/27 (96%)

Query: 2  ADWGPVIVAVVLFVLLTPGLLFQIPGK 28
          ADWGPV+V+VVLF+LL+PGLLFQ+P +
Sbjct: 13 ADWGPVVVSVVLFILLSPGLLFQLPAR 39


>GSVIVT01033074001 assembled CDS
          Length = 69

 Score = 46.2 bits (108), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 20/29 (68%), Positives = 25/29 (86%)

Query: 1  MADWGPVIVAVVLFVLLTPGLLFQIPGKG 29
          M+DWG V V+V+LF+LL PGLL QIPG+G
Sbjct: 1  MSDWGAVFVSVMLFILLMPGLLIQIPGRG 29