Jatropha Genome Database

JcCB0415641.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0415641.10 - phase: 1 /partial
         (144 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01023936001 assembled CDS                                       100   3e-22
GSVIVT01023937001 assembled CDS                                        99   5e-22

>GSVIVT01023936001 assembled CDS
          Length = 367

 Score =  100 bits (248), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 64/145 (44%), Positives = 82/145 (56%), Gaps = 14/145 (9%)

Query: 1   CNSSVSTTSIDYPLLVPNGTYFFTANSCVKCNCDAANNWTLQCEPSGFRPAAKSTWSTCP 60
           C S V  TS+DYPLL+ NGTY +TAN+CVKC C +ANNWTLQCE SG       T  TCP
Sbjct: 208 CTSVVKNTSLDYPLLLSNGTYAYTANNCVKCQCYSANNWTLQCEQSGLNI----TNGTCP 263

Query: 61  SMRCDXXXXXXXXXXXXXXXXXXXXXYAGFSSQNILTTLATVSTCPATGPGIESPDDNYA 120
           SM C                      YAG+++Q I T+L   STC +T     +P  +YA
Sbjct: 264 SMECG-SSGLSIGNSTSTTCNRTTCAYAGYTNQTIFTSLVE-STCSSTN---NAP--SYA 316

Query: 121 SRISL---SWSFLRISLPLIMLSVH 142
           S+I+L    W+F+ I   L+ML +H
Sbjct: 317 SKITLPSWRWNFVFIVSQLVMLYLH 341


>GSVIVT01023937001 assembled CDS
          Length = 357

 Score = 99.4 bits (246), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 59/128 (46%), Positives = 73/128 (57%), Gaps = 17/128 (13%)

Query: 9   SIDYPLLVPNGTYFFTANSCVKCNCDAANNWTLQCEPSGFRPAAKSTWSTCPSMRCDXXX 68
           S+DYPLLV NGTY +TANSCV C CD+ANNWTLQCEPS  + + +    TCPSM+C+   
Sbjct: 229 SLDYPLLVANGTYVYTANSCVMCKCDSANNWTLQCEPSQLKLSNR----TCPSMQCE-GS 283

Query: 69  XXXXXXXXXXXXXXXXXXYAGFSSQNILTTLATVSTCPATGPGIESPDDNYASRISL--- 125
                             YAG++SQ ILTTL   + C A+         N A +I L   
Sbjct: 284 SLYIGNSTSAGCNRTTCAYAGYTSQMILTTLVEGNACSAS---------NDAQKIGLQVW 334

Query: 126 SWSFLRIS 133
           SW+FL IS
Sbjct: 335 SWAFLFIS 342