Jatropha Genome Database

JcCB0403471.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0403471.20 + phase: 0 /partial
         (245 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01001372001 assembled CDS                                       259   6e-70
GSVIVT01022128001 assembled CDS                                       206   8e-54

>GSVIVT01001372001 assembled CDS
          Length = 475

 Score =  259 bits (663), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 136/228 (59%), Positives = 167/228 (73%), Gaps = 8/228 (3%)

Query: 1   MAILHSLSPLHHRYKNCNGILDFRSKTSNPRKYTVRC---DY---DEDFCKERYENKRFR 54
           MA L  LS  + RY+N   I +FR +  + + Y +RC   DY   D D   ++ E KRFR
Sbjct: 1   MAPLQGLSSCN-RYQNSINISEFRVEKLSMKSYYIRCEGRDYVSLDGDGNGKK-EKKRFR 58

Query: 55  MXXXXXXXXXXXXXXXXKHKGFDVKVFEKDLSAVRGEGKHRGPIXXXXXXXXXXXXIDKQ 114
           +                KH+GF+VKVFEKDLSAVRGEG+HRGPI            ID+ 
Sbjct: 59  VLIAGGGIGGLVLALAAKHRGFEVKVFEKDLSAVRGEGRHRGPIQLLSSALAVLEAIDEN 118

Query: 115 VAEQIMEAGCVTGDRINGLADGVSGEWFTQFDLSTPALQRALPVTRVICRMALQDILLNA 174
           VA+QIMEAGCVTGDRINGLADG+SGEW ++FDL TPA++R LPVT+VICRM+LQDIL+NA
Sbjct: 119 VAKQIMEAGCVTGDRINGLADGLSGEWLSKFDLLTPAIRRGLPVTQVICRMSLQDILVNA 178

Query: 175 VGLDIVSNKSKVVDFIEDSSKVTVILEDGRRYNGDVLVGADGIWSKVR 222
           VGL+I+SNKSKVVDF+EDS+KVTV LEDGR+Y+GDVL+GADGIWS+VR
Sbjct: 179 VGLEILSNKSKVVDFMEDSNKVTVTLEDGRQYDGDVLIGADGIWSEVR 226


>GSVIVT01022128001 assembled CDS
          Length = 658

 Score =  206 bits (524), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 97/151 (64%), Positives = 117/151 (77%)

Query: 72  KHKGFDVKVFEKDLSAVRGEGKHRGPIXXXXXXXXXXXXIDKQVAEQIMEAGCVTGDRIN 131
           K KGFDV VFEKD+SA+RGEG++RGPI            +D +VAE++M AGC+TGDRIN
Sbjct: 96  KKKGFDVVVFEKDMSAIRGEGQYRGPIQIQSNALAALEAVDMEVAEEVMRAGCITGDRIN 155

Query: 132 GLADGVSGEWFTQFDLSTPALQRALPVTRVICRMALQDILLNAVGLDIVSNKSKVVDFIE 191
           GL DGVSG+W+ +FD  TPA +R LPVTRVI RM LQ IL  AVG DI+ N S VVDF +
Sbjct: 156 GLVDGVSGDWYVKFDTFTPAAERGLPVTRVISRMTLQQILARAVGEDIIMNGSNVVDFED 215

Query: 192 DSSKVTVILEDGRRYNGDVLVGADGIWSKVR 222
           D +KVTVILE+G+RY GD+L+GADGIWSKVR
Sbjct: 216 DGNKVTVILENGQRYEGDLLIGADGIWSKVR 246