Jatropha Genome Database

JcCB0402451.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0402451.20 - phase: 0 /partial/short
         (49 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01008034001 assembled CDS                                        88   8e-19
GSVIVT01020027001 assembled CDS                                        82   6e-17
GSVIVT01011380001 assembled CDS                                        78   9e-16
GSVIVT01008030001 assembled CDS                                        52   6e-08

>GSVIVT01008034001 assembled CDS
          Length = 91

 Score = 87.8 bits (216), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 44/49 (89%), Positives = 48/49 (97%)

Query: 1  VSAAKVLQETCNYIRNLHREVDDLSERLSELLATTDTAQAAIIRNLLMQ 49
          VSAAKVLQETCNYIR+L+REVDDLSERLSELLATTD+AQAAIIR+LL Q
Sbjct: 43 VSAAKVLQETCNYIRSLNREVDDLSERLSELLATTDSAQAAIIRSLLTQ 91


>GSVIVT01020027001 assembled CDS
          Length = 92

 Score = 82.0 bits (201), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 42/50 (84%), Positives = 46/50 (92%), Gaps = 2/50 (4%)

Query: 1  VSAAKVLQETCNYIRNLHREVDDLSERLSELLATTDT--AQAAIIRNLLM 48
          VSA+KVLQETCNYIRNLHREVDDLS+RLS LLA+TDT   QAAIIR+LLM
Sbjct: 43 VSASKVLQETCNYIRNLHREVDDLSDRLSALLASTDTDSDQAAIIRSLLM 92


>GSVIVT01011380001 assembled CDS
          Length = 90

 Score = 77.8 bits (190), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 39/50 (78%), Positives = 45/50 (90%), Gaps = 2/50 (4%)

Query: 1  VSAAKVLQETCNYIRNLHREVDDLSERLSELLATT--DTAQAAIIRNLLM 48
          VSA+KVLQETCNYIR+LHREVDDLSERLS LLAT   D+ +AAIIR+L+M
Sbjct: 41 VSASKVLQETCNYIRSLHREVDDLSERLSRLLATVDADSPEAAIIRSLIM 90


>GSVIVT01008030001 assembled CDS
          Length = 90

 Score = 52.0 bits (123), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 24/45 (53%), Positives = 32/45 (71%)

Query: 2  SAAKVLQETCNYIRNLHREVDDLSERLSELLATTDTAQAAIIRNL 46
          SA ++L+ETC+YI+ LHREV DLSERLS+LL + D      +  L
Sbjct: 40 SAWRILKETCSYIKRLHREVGDLSERLSQLLDSLDNINGVEVEQL 84