Jatropha Genome Database

JcCB0402451.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0402451.10 - phase: 1 /TE
         (447 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01000708001 assembled CDS                                       130   1e-30

>GSVIVT01000708001 assembled CDS
          Length = 3033

 Score =  130 bits (327), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 70/172 (40%), Positives = 98/172 (56%), Gaps = 1/172 (0%)

Query: 235  NSILSQLQRTRADILIWDLLIASKEHREALLEAMTFVRVPARIQSIDMINVLQR-RIGEV 293
            + IL QLQ T+A I IW LL +S  HR+AL  A++ +RV   I    +I+++   R   +
Sbjct: 2862 DEILRQLQSTQARISIWSLLASSSTHRDALTRALSQIRVDTTITPEGLIHMMTAGRATCI 2921

Query: 294  TFFDSDLPPEGRNHCKPLYIQIAVNGRDTRNVMVDNGSALCVCPLKMLSKFKIEESELEP 353
             F D DLPPEG  H +PLYI +  +GR   +V++DNGSAL VCPL          S+  P
Sbjct: 2922 VFSDDDLPPEGSGHTRPLYISVGCSGRRVPSVLLDNGSALNVCPLATAIALGYAPSDFGP 2981

Query: 354  SNIVVKAYDNTMRNAKGTFKAKISTGAVESWVDVVVLDSLANYSLLLGRPWL 405
            S   V+AYD+T R   GT + ++  G         VL    +++LLLGRPW+
Sbjct: 2982 STQTVRAYDSTRREVMGTLEIELLIGPATFVAVFQVLRIPTSFNLLLGRPWI 3033