Jatropha Genome Database
- JcCB0402101.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0402101.10 - phase: 0 /partial
(181 letters)
Database: grape_pep_20100319
26,346 sequences; 9,959,944 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
GSVIVT01037538001 assembled CDS 187 2e-48
GSVIVT01010807001 assembled CDS 102 9e-23
GSVIVT01033612001 assembled CDS 90 7e-19
GSVIVT01015058001 assembled CDS 73 8e-14
GSVIVT01034451001 assembled CDS 71 2e-13
GSVIVT01015060001 assembled CDS 70 4e-13
GSVIVT01008192001 assembled CDS 70 4e-13
GSVIVT01026131001 assembled CDS 70 6e-13
GSVIVT01007474001 assembled CDS 68 2e-12
GSVIVT01034422001 assembled CDS 67 5e-12
GSVIVT01034671001 assembled CDS 66 7e-12
GSVIVT01015059001 assembled CDS 66 8e-12
GSVIVT01008191001 assembled CDS 59 1e-09
GSVIVT01003820001 assembled CDS 50 8e-07
>GSVIVT01037538001 assembled CDS
Length = 328
Score = 187 bits (475), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 95/164 (57%), Positives = 117/164 (71%), Gaps = 34/164 (20%)
Query: 22 GISLP--CSVANAATFLLYWYSFNICKC---RLRKYWLKGEKAGTSEVLAILPGFPDNVR 76
G+ P S++ +FL+ +C+ RL KYWLKG+KAGTSEV AILPG+PDNVR
Sbjct: 193 GLQFPNGVSLSKDGSFLV------LCEGSPGRLVKYWLKGDKAGTSEVFAILPGYPDNVR 246
Query: 77 TNEEGNFWVAVHCRRSLYTYICALYPKLRMFMLKLPISAKIQYLLHIGGRLHAVAVKYSP 136
TNE+G FWVA+HCRR++Y QYLLHIGGRLHAV VKYSP
Sbjct: 247 TNEKGEFWVAIHCRRTMY-----------------------QYLLHIGGRLHAVVVKYSP 283
Query: 137 EGKILQILEDSQGKVVKAISEVEEKDGKLWMGSVLMPFIGVYNL 180
EGK+++ILEDS+GKVV+A+SEVEE++GKLWMGSVLMPF+ VY L
Sbjct: 284 EGKLVKILEDSEGKVVRAVSEVEEREGKLWMGSVLMPFVAVYQL 327
>GSVIVT01010807001 assembled CDS
Length = 365
Score = 102 bits (254), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 54/139 (38%), Positives = 84/139 (60%), Gaps = 6/139 (4%)
Query: 17 HFVASGISLPCSV--ANAATFLLYWYSFNICKCRLRKYWLKGEKAGTSEVLAILPGFPDN 74
H V G++ P V + +FLL+ + N CRL KYWL+G K+G E++A LPGFPDN
Sbjct: 188 HLVLDGLAFPNGVQLSGDQSFLLFTETTN---CRLMKYWLEGPKSGIVELVANLPGFPDN 244
Query: 75 VRTNEEGNFWVAVHCRRSLYTYICALYPKLRMFMLKLPISAKIQYLLHIGGRLHAVAVKY 134
VR NE G FWVA+ C R+ + P L+ +LP+ + L +G +++ V +
Sbjct: 245 VRLNERGQFWVAIDCCRTPAQEVLTHNPWLKNIYFRLPVKLSMLARL-MGMKMYTVISLF 303
Query: 135 SPEGKILQILEDSQGKVVK 153
+ +G+IL++LED +G V++
Sbjct: 304 NEKGEILEVLEDRKGLVMR 322
>GSVIVT01033612001 assembled CDS
Length = 365
Score = 89.7 bits (221), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 69/137 (50%), Gaps = 25/137 (18%)
Query: 44 ICKCRLRKYWLKGEKAGTSEVLAILPGFPDNVRTNEEGNFWVAVHCRRSLYTYICALYPK 103
+CR+ ++WL+ KAGT EV +LPGFPDN++ N +G FWV +H R+ YP
Sbjct: 240 TSRCRILRFWLQTSKAGTVEVFTLLPGFPDNIKRNSKGEFWVGMHSRKGKLVEWFLSYPW 299
Query: 104 LRMFMLKLPISAKIQYLLHIGGRLHAVAVKYSPEGKILQILEDSQGKVVKAISEVEEKDG 163
+ +LKLP P G L S+ + +ISEV E+DG
Sbjct: 300 IGRTLLKLPF----------------------PHG-FLSFF--SKWRKTGSISEVYERDG 334
Query: 164 KLWMGSVLMPFIGVYNL 180
LW+GSV P +G Y +
Sbjct: 335 SLWIGSVTTPCVGKYEI 351
>GSVIVT01015058001 assembled CDS
Length = 382
Score = 72.8 bits (177), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 73/147 (49%), Gaps = 27/147 (18%)
Query: 46 KCRLRKYWLKGEKAGTSEV-LAILPGFPDNVRTNEEGNFWVA-----------VHCRRSL 93
K R KYWL+GE+ G +E + LPG PDNV +G+FW+A VH ++L
Sbjct: 248 KFRCLKYWLEGERKGRTETFIDNLPGGPDNVNLAPDGSFWIALIKVTSDGFEFVHTSKAL 307
Query: 94 YTYICALYPKLRMFMLKLPISAKIQYLLHIGGRLHAVAVKYSPEGKILQILEDSQGKVVK 153
++ A +PKL + L G A VK + +GKI+ +D GKV+
Sbjct: 308 -KHLLATFPKL--------------FQLVKGSHKKASVVKVAADGKIIDKFDDPNGKVIS 352
Query: 154 AISEVEEKDGKLWMGSVLMPFIGVYNL 180
++ E + L++GS+ FIG+ L
Sbjct: 353 FVTSALEFEDYLYLGSLNTNFIGILPL 379
>GSVIVT01034451001 assembled CDS
Length = 653
Score = 71.2 bits (173), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 69/134 (51%), Gaps = 38/134 (28%)
Query: 47 CRLRKYWLKGEKAGTSEVLAILPGFPDNVRTNEEGNFWVAV-HCRRSLYTYICALYPKLR 105
++ +YWL+G+K+ S+ L G PDN++ N G FWVA +C R P+L+
Sbjct: 557 AKVTRYWLQGQKSQLSDTFTQLVGCPDNIQRNIHGEFWVAQNNCGR----------PELK 606
Query: 106 MFMLKLPISAKIQYLLHIGGRLHAVAVKYSPEGKILQILEDSQGKVVKAISEVEEKDGKL 165
+ +++K + EGKI++ L + G +SEV+EKD L
Sbjct: 607 V-----------------------ISIKLNKEGKIMEELSEDFG----PLSEVQEKDNDL 639
Query: 166 WMGSVLMPFIGVYN 179
W+GSVL+ +IG+ N
Sbjct: 640 WLGSVLLSYIGMLN 653
>GSVIVT01015060001 assembled CDS
Length = 368
Score = 70.5 bits (171), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 70/143 (48%), Gaps = 27/143 (18%)
Query: 46 KCRLRKYWLKGEKAGTSEV-LAILPGFPDNVRTNEEGNFWVA-----------VHCRRSL 93
K R KYWLKGE+ G +E + LP PDN+ +G+FW+A VH ++L
Sbjct: 234 KFRCLKYWLKGERKGRTETFIDNLPNGPDNINLAPDGSFWIALIKLASDGFEFVHASKAL 293
Query: 94 YTYICALYPKLRMFMLKLPISAKIQYLLHIGGRLHAVAVKYSPEGKILQILEDSQGKVVK 153
++ A +PKL + L G A VK + +GKI+ +D GKV+
Sbjct: 294 KHFL-ATFPKL--------------FQLVNGSNEKATVVKVAADGKIVDKFDDPNGKVMS 338
Query: 154 AISEVEEKDGKLWMGSVLMPFIG 176
++ E + L++GS+ FIG
Sbjct: 339 FVTSALEFEDHLYLGSLNTNFIG 361
>GSVIVT01008192001 assembled CDS
Length = 1075
Score = 70.5 bits (171), Expect = 4e-13, Method: Composition-based stats.
Identities = 40/128 (31%), Positives = 60/128 (46%), Gaps = 37/128 (28%)
Query: 48 RLRKYWLKGEKAGTSEVLAILPGFPDNVRTNEEGNFWVAVHCRRSLYTYICALYPKLRMF 107
R+++YWL+G KA TSE+ G PDN++ N G FWVA
Sbjct: 229 RIQRYWLRGPKANTSELFLKPTGTPDNIKRNARGEFWVAA-------------------- 268
Query: 108 MLKLPISAKIQYLLHIGGRLHAVA---VKYSPEGKILQILEDSQGKVVKAISEVEEKDGK 164
+IG + A A ++ S EGKILQ++ G + + ISEV E +G
Sbjct: 269 --------------NIGAEMAAAAPLGLRVSEEGKILQVVAFDTGDITRTISEVHEYNGA 314
Query: 165 LWMGSVLM 172
L++G ++
Sbjct: 315 LYVGEFML 322
Score = 57.4 bits (137), Expect = 4e-09, Method: Composition-based stats.
Identities = 36/113 (31%), Positives = 54/113 (47%), Gaps = 26/113 (23%)
Query: 48 RLRKYWLKGEKAGTSEVLAILPGFPDNVRTNEEGNFWVAVHCRRSLYTYICALYPKLRMF 107
R+R++WL G KA TSEV L G P N++ NE G FWVA++ AL P
Sbjct: 647 RIRRFWLGGPKANTSEVFMELLGKPSNIKRNERGEFWVAIN---------NALGPPAPPE 697
Query: 108 MLKLPISAKIQYLLHIGGRLHAVAVKYSPEGKILQILEDSQGKVVKAISEVEE 160
L +P+ ++ S +G++L++ + AISEV+E
Sbjct: 698 SLVMPL-----------------GLRLSNDGRVLEVAPLVGAYQISAISEVQE 733
Score = 56.6 bits (135), Expect = 6e-09, Method: Composition-based stats.
Identities = 21/41 (51%), Positives = 31/41 (75%)
Query: 48 RLRKYWLKGEKAGTSEVLAILPGFPDNVRTNEEGNFWVAVH 88
R++++WLKG KA TS++ PG PDN+++N G FWVAV+
Sbjct: 374 RIQRFWLKGRKANTSQLFLKPPGTPDNIKSNARGEFWVAVN 414
Score = 50.8 bits (120), Expect = 3e-07, Method: Composition-based stats.
Identities = 43/152 (28%), Positives = 67/152 (44%), Gaps = 33/152 (21%)
Query: 28 SVANAATFLLYWYSFNICKCRLRKYWLKGEKAGTSEVLAILPGFPDNVRTNEEGNFWVAV 87
+V+N F+L FN R+ K+WL+G KA T+E G P N++ GNFWVAV
Sbjct: 954 AVSNDGMFVLV-SEFN--ANRILKFWLRGPKASTAETFVSFRGRPVNIKRTASGNFWVAV 1010
Query: 88 HCRRSLYTYICALYPKLRMFMLKLPISAKIQYLLHIGGRLHAVAVKYSPEGKILQILE-D 146
+ +P + + G R+ S G IL+ + D
Sbjct: 1011 N----------------------VPNNQSPPTTILTGQRI-------SYYGTILETVSFD 1041
Query: 147 SQGKVVKAISEVEEKDGKLWMGSVLMPFIGVY 178
Q I+EV++ G L++G+ F+GV+
Sbjct: 1042 DQYGGSTLITEVQQHLGALYIGANSANFVGVH 1073
>GSVIVT01026131001 assembled CDS
Length = 343
Score = 69.7 bits (169), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 68/134 (50%), Gaps = 38/134 (28%)
Query: 47 CRLRKYWLKGEKAGTSEVLAILPGFPDNVRTNEEGNFWVAV-HCRRSLYTYICALYPKLR 105
++ +YWL+G+K+ S+ L G PDN++ N G FWVA +C R P+L+
Sbjct: 247 AKVTRYWLQGQKSQLSDTFTQLVGCPDNIQRNIHGEFWVAQNNCGR----------PELK 296
Query: 106 MFMLKLPISAKIQYLLHIGGRLHAVAVKYSPEGKILQILEDSQGKVVKAISEVEEKDGKL 165
+ +VK + EGKI++ L + G +SEV+EKD L
Sbjct: 297 V-----------------------RSVKLNKEGKIMEELSEDFG----PLSEVQEKDNDL 329
Query: 166 WMGSVLMPFIGVYN 179
W+GSVL+ +IG+ N
Sbjct: 330 WLGSVLLSYIGLLN 343
>GSVIVT01007474001 assembled CDS
Length = 334
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 68/134 (50%), Gaps = 38/134 (28%)
Query: 47 CRLRKYWLKGEKAGTSEVLAILPGFPDNVRTNEEGNFWVAV-HCRRSLYTYICALYPKLR 105
++ +YWL+G+K+ S+ L G PDN++ N G FWVA +C R P+L+
Sbjct: 238 AKVTRYWLQGQKSQLSDTFTRLVGCPDNIQRNIHGEFWVAQNNCGR----------PELK 287
Query: 106 MFMLKLPISAKIQYLLHIGGRLHAVAVKYSPEGKILQILEDSQGKVVKAISEVEEKDGKL 165
+ +VK + EG+I++ L + G +SEV+EKD L
Sbjct: 288 V-----------------------RSVKLNREGRIMEELSEDFG----PLSEVQEKDNDL 320
Query: 166 WMGSVLMPFIGVYN 179
W+G V++P+IG+ N
Sbjct: 321 WLGYVILPYIGLLN 334
>GSVIVT01034422001 assembled CDS
Length = 340
Score = 67.0 bits (162), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 77/160 (48%), Gaps = 38/160 (23%)
Query: 18 FVASGISLPCSVANAATFLLYWYSFNICKCRLRKYWLKGEKAGTSEVLAILPGFPDNVRT 77
F A+G++L + +FLL R+ ++WL+G ++ T +V A L G PDN+
Sbjct: 212 FFANGVAL----SRNGSFLLV---TETNANRVLRFWLEGPRSQTRDVFAKLDGCPDNIER 264
Query: 78 NEEGNFWVAVHCRRSLYTYICALYPKLRMFMLKLPISAKIQYLLHIGGRLHAVAVKYSPE 137
N +G FWVA + PK + P+ I A+K E
Sbjct: 265 NPKGEFWVAQN-------------PKFD--SIGTPLQTNIS------------ALKLDEE 297
Query: 138 GKILQILEDSQGKVVKAISEVEEKDGKLWMGSVLMPFIGV 177
GK+L++L + G ++S+V EKD +W+GSVL +G+
Sbjct: 298 GKVLRVLNEEFG----SLSDVIEKDDCMWLGSVLQSHVGM 333
>GSVIVT01034671001 assembled CDS
Length = 322
Score = 66.2 bits (160), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 66/133 (49%), Gaps = 38/133 (28%)
Query: 48 RLRKYWLKGEKAGTSEVLAILPGFPDNVRTNEEGNFWVAV-HCRRSLYTYICALYPKLRM 106
++ +YWL+G+K+ S+ L G PDN++ N G FWVA +C R P+L++
Sbjct: 227 KVTRYWLRGQKSQLSDTFTQLVGCPDNIQRNIHGEFWVAQNNCGR----------PELKV 276
Query: 107 FMLKLPISAKIQYLLHIGGRLHAVAVKYSPEGKILQILEDSQGKVVKAISEVEEKDGKLW 166
++L + EGKI++ L + G V SEV+EKD LW
Sbjct: 277 RPVRL-----------------------NEEGKIMEELSEDVGPV----SEVQEKDNSLW 309
Query: 167 MGSVLMPFIGVYN 179
+ SV+ P+I V N
Sbjct: 310 LCSVIFPYISVLN 322
>GSVIVT01015059001 assembled CDS
Length = 461
Score = 66.2 bits (160), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 69/143 (48%), Gaps = 27/143 (18%)
Query: 46 KCRLRKYWLKGEKAGTSEVLAI-LPGFPDNVRTNEEGNFWVA-----------VHCRRSL 93
K R KYWLKGE+ G +EV LPG PDN+ +G+FW+A VH ++
Sbjct: 327 KFRCLKYWLKGERKGRTEVFVDNLPGGPDNINLAPDGSFWIALLELSREGMGFVHTSKA- 385
Query: 94 YTYICALYPKLRMFMLKLPISAKIQYLLHIGGRLHAVAVKYSPEGKILQILEDSQGKVVK 153
++ A +PKL + G + A+ VK +GK+++ D G V+
Sbjct: 386 SKHLVATFPKLLGLVQ--------------GMQKKAMVVKVGADGKMMKRFNDPNGSVMS 431
Query: 154 AISEVEEKDGKLWMGSVLMPFIG 176
++ E + L++GS+ FIG
Sbjct: 432 FVTNALEFEEHLYLGSLNTNFIG 454
>GSVIVT01008191001 assembled CDS
Length = 693
Score = 58.9 bits (141), Expect = 1e-09, Method: Composition-based stats.
Identities = 41/135 (30%), Positives = 64/135 (47%), Gaps = 32/135 (23%)
Query: 48 RLRKYWLKGEKAGTSEVLAILPGFPDNVRTNEEGNFWVAVHCRRSLYTYICALYPKLRMF 107
R+RK+WL+G KA TSE+L P N++ NEEG FWVA F
Sbjct: 583 RIRKFWLQGPKATTSEILKEFTVRPANIKRNEEGEFWVA--------------------F 622
Query: 108 MLKLPISAKIQYLLHIGGRLHAVAVKYSPEGKILQILE-DSQGKVVKAISEVEEKDGKLW 166
++ + + + ++ S +G IL+ + D+Q ISEV +GK++
Sbjct: 623 LVADETGS-------CPSQQQSPGLRISGDGMILEAISLDTQ----SGISEVAVYNGKMY 671
Query: 167 MGSVLMPFIGVYNLA 181
+GS + F+ VY A
Sbjct: 672 IGSPFLHFVDVYAWA 686
Score = 52.0 bits (123), Expect = 1e-07, Method: Composition-based stats.
Identities = 39/134 (29%), Positives = 60/134 (44%), Gaps = 32/134 (23%)
Query: 48 RLRKYWLKGEKAGTSEVLAILPGFPDNVRTNEEGNFWVAVHCRRSLYTYICALYPKLRMF 107
R +K+WL+G KA TSE+ G PDN++T+ FWVAV+ +S+ T +
Sbjct: 235 RTQKFWLRGPKANTSELFFTFQGRPDNIKTSITDTFWVAVNIGKSVPTTV---------- 284
Query: 108 MLKLPISAKIQYLLHIGGRLHAVAVKYSPEGKILQILEDSQGKVVKAISEVEEK-DGKLW 166
G R+ A G +LQ + ISEV+ + + L+
Sbjct: 285 --------------PTGQRMDA-------HGNVLQTVNFEAEYGSTMISEVQGRGEIFLY 323
Query: 167 MGSVLMPFIGVYNL 180
+GS ++GVY L
Sbjct: 324 VGSRDASYVGVYTL 337
>GSVIVT01003820001 assembled CDS
Length = 820
Score = 49.7 bits (117), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 52/96 (54%), Gaps = 8/96 (8%)
Query: 14 IRNHFVASGISLPCSVANAATFLLYWYSFNICKCRLRKYWLKGEKAGT-SEVLAILPGFP 72
+R+ + A+G+ V+ TFL++ SF R KY+L+GE+ G+ + + LPG P
Sbjct: 659 VRDLYFANGVV----VSPDQTFLIFCESF---MKRCSKYYLQGERKGSMDKFIDNLPGMP 711
Query: 73 DNVRTNEEGNFWVAVHCRRSLYTYICALYPKLRMFM 108
DN+ + EG++W+ + + + YP +R M
Sbjct: 712 DNILYDGEGHYWIGLATGYNDLWDLAFKYPSIRKVM 747