Jatropha Genome Database

JcCB0402071.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0402071.10 - phase: 0 /partial
         (321 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01011565001 assembled CDS                                       624   e-179
GSVIVT01035247001 assembled CDS                                       622   e-179
GSVIVT01000391001 assembled CDS                                       570   e-163
GSVIVT01011564001 assembled CDS                                       544   e-155
GSVIVT01010526001 assembled CDS                                        69   2e-12

>GSVIVT01011565001 assembled CDS
          Length = 462

 Score =  624 bits (1608), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 294/321 (91%), Positives = 312/321 (97%)

Query: 1   MALSKTALDTDVSVHSTFASRYVRASLPRFKMPVNSIPKEAAYQIINDELMLDGNPRLNL 60
           M LSKTA ++DVSVHSTFASRYV+ASLPRFK+P NSIPKEAAYQIINDELMLDGNPRLNL
Sbjct: 1   MVLSKTASESDVSVHSTFASRYVKASLPRFKLPENSIPKEAAYQIINDELMLDGNPRLNL 60

Query: 61  ASFVTTWMEPECDKLIMASVNKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLGEAEAAVG 120
           ASFVTTWMEPECDKL+MA++NKNYVDMDEYPVTTELQNRCVN+IAHLFNAPL ++EAAVG
Sbjct: 61  ASFVTTWMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIAHLFNAPLEDSEAAVG 120

Query: 121 VGTVGSSEAIMLAGLAFKRKWQNRRKAQGKPIDNPNIVTGANVQVCWEKFARYFEVELKE 180
           VGTVGSSEAIMLAGLAFKRKWQN+RKA+GKP D PNIVTGANVQVCWEKFARYFEVELKE
Sbjct: 121 VGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPYDKPNIVTGANVQVCWEKFARYFEVELKE 180

Query: 181 VKLKPDYYVLDPEKAVEMVDENTICVAAILGSTLNGEFEDVKQLNDLLMEKNKETGWETP 240
           VKL+  YYV+DPEKAVEMVDENTICVAAILGSTLNGEFEDVK LNDLL+EKNK+TGW+TP
Sbjct: 181 VKLRDGYYVMDPEKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLVEKNKQTGWDTP 240

Query: 241 IHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRSKEDLPEEL 300
           IHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWV+WRSKEDLPEEL
Sbjct: 241 IHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVVWRSKEDLPEEL 300

Query: 301 IFHINYLGADQPTFTLNFSKG 321
           IFHINYLGADQPTFTLNFSKG
Sbjct: 301 IFHINYLGADQPTFTLNFSKG 321


>GSVIVT01035247001 assembled CDS
          Length = 488

 Score =  622 bits (1605), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 294/321 (91%), Positives = 309/321 (96%)

Query: 1   MALSKTALDTDVSVHSTFASRYVRASLPRFKMPVNSIPKEAAYQIINDELMLDGNPRLNL 60
           MALS+TA +++ S+HSTFASRYVR SLPRFK+P NSIPKEAAYQIINDELMLDGNPRLNL
Sbjct: 1   MALSETASESNASIHSTFASRYVRVSLPRFKIPENSIPKEAAYQIINDELMLDGNPRLNL 60

Query: 61  ASFVTTWMEPECDKLIMASVNKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLGEAEAAVG 120
           ASFVTTWMEPECDKLIMAS+NKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLGE+EAAVG
Sbjct: 61  ASFVTTWMEPECDKLIMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLGESEAAVG 120

Query: 121 VGTVGSSEAIMLAGLAFKRKWQNRRKAQGKPIDNPNIVTGANVQVCWEKFARYFEVELKE 180
           VGTVGSSEAIMLAGLAFKRKWQN+RKA+GKP D PNIVTGANVQVCWEKFARYFEVELKE
Sbjct: 121 VGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPHDKPNIVTGANVQVCWEKFARYFEVELKE 180

Query: 181 VKLKPDYYVLDPEKAVEMVDENTICVAAILGSTLNGEFEDVKQLNDLLMEKNKETGWETP 240
           VKL   YYV+DP KAVEMVDENTICVAAILGSTLNGEFEDVK LNDLL +KNKETGW+TP
Sbjct: 181 VKLTDGYYVMDPVKAVEMVDENTICVAAILGSTLNGEFEDVKHLNDLLTKKNKETGWDTP 240

Query: 241 IHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRSKEDLPEEL 300
           IHVDAASGGFIAPFL+PELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRSKEDLP+EL
Sbjct: 241 IHVDAASGGFIAPFLHPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRSKEDLPDEL 300

Query: 301 IFHINYLGADQPTFTLNFSKG 321
           IFHINYLGADQPTFTLNFSKG
Sbjct: 301 IFHINYLGADQPTFTLNFSKG 321


>GSVIVT01000391001 assembled CDS
          Length = 487

 Score =  570 bits (1470), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 267/321 (83%), Positives = 291/321 (90%)

Query: 1   MALSKTALDTDVSVHSTFASRYVRASLPRFKMPVNSIPKEAAYQIINDELMLDGNPRLNL 60
           M +S T  D+   +H+TFASRYVR  LP+FKMP  SIPKEAA+QII+DELMLDGNPRLNL
Sbjct: 1   MVISTTISDSSEHLHATFASRYVRDPLPKFKMPERSIPKEAAFQIISDELMLDGNPRLNL 60

Query: 61  ASFVTTWMEPECDKLIMASVNKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLGEAEAAVG 120
           ASFVTTWME ECDKLIMASVNKNYVDMDEYP+     NRCVNMIAHLFNAP+GE E A+G
Sbjct: 61  ASFVTTWMEEECDKLIMASVNKNYVDMDEYPLVGPHHNRCVNMIAHLFNAPVGENETAIG 120

Query: 121 VGTVGSSEAIMLAGLAFKRKWQNRRKAQGKPIDNPNIVTGANVQVCWEKFARYFEVELKE 180
           VGTVGSSEAIMLAGLAFKRKWQ +RK++GKP D PNIVTGANVQVCWEKFARYFEVELKE
Sbjct: 121 VGTVGSSEAIMLAGLAFKRKWQQKRKSEGKPYDKPNIVTGANVQVCWEKFARYFEVELKE 180

Query: 181 VKLKPDYYVLDPEKAVEMVDENTICVAAILGSTLNGEFEDVKQLNDLLMEKNKETGWETP 240
           VKL+  YYV+DP KAVEMVDENTICVAAILGSTL GEFEDVK LN+LL +KN ETGW TP
Sbjct: 181 VKLREGYYVMDPVKAVEMVDENTICVAAILGSTLTGEFEDVKLLNELLTKKNTETGWGTP 240

Query: 241 IHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRSKEDLPEEL 300
           IHVDAASGGFIAPFL+P+LEWDFRLPLVKSINVSGHKYGLVYAG+GWV+WR+K+DLPEEL
Sbjct: 241 IHVDAASGGFIAPFLHPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPEEL 300

Query: 301 IFHINYLGADQPTFTLNFSKG 321
           IFHINYLG+DQPTFTLNFSKG
Sbjct: 301 IFHINYLGSDQPTFTLNFSKG 321


>GSVIVT01011564001 assembled CDS
          Length = 567

 Score =  544 bits (1402), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 256/305 (83%), Positives = 278/305 (91%), Gaps = 1/305 (0%)

Query: 18  FASRYVRASLPRFKMPVNSIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLIM 77
           FASRYV+   PR+KMP  SIPKEAAYQI++DEL+LDG PRLNLA+FVTTWMEPECDKL+ 
Sbjct: 21  FASRYVQDPPPRYKMPEKSIPKEAAYQIVHDELLLDGLPRLNLATFVTTWMEPECDKLMA 80

Query: 78  ASVNKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLG-EAEAAVGVGTVGSSEAIMLAGLA 136
            ++NKNYVDMDEYPVTTELQNRCVNMIA LFNAP   + + AVGVGTVGSSEA+MLAGLA
Sbjct: 81  EAINKNYVDMDEYPVTTELQNRCVNMIAKLFNAPSADQTKQAVGVGTVGSSEAMMLAGLA 140

Query: 137 FKRKWQNRRKAQGKPIDNPNIVTGANVQVCWEKFARYFEVELKEVKLKPDYYVLDPEKAV 196
           FK+KWQN+RKAQ KP D PNIVTGANVQVCWEKFARYFEVELKEVKL+  YYV+DP KAV
Sbjct: 141 FKKKWQNKRKAQKKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLREGYYVMDPVKAV 200

Query: 197 EMVDENTICVAAILGSTLNGEFEDVKQLNDLLMEKNKETGWETPIHVDAASGGFIAPFLY 256
           EMVDENTICVAAILGST NGEFEDVK LN LL +KNK TGW+TPIHVDAASGGF+APFLY
Sbjct: 201 EMVDENTICVAAILGSTFNGEFEDVKLLNTLLTQKNKRTGWDTPIHVDAASGGFVAPFLY 260

Query: 257 PELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRSKEDLPEELIFHINYLGADQPTFTL 316
           PELEWDFRLPLVKSINVSGHKYGLVYAG+GW IWRSKE+LPEELIFHINYLG D+PTFTL
Sbjct: 261 PELEWDFRLPLVKSINVSGHKYGLVYAGVGWAIWRSKEELPEELIFHINYLGGDEPTFTL 320

Query: 317 NFSKG 321
           NFSKG
Sbjct: 321 NFSKG 325


>GSVIVT01010526001 assembled CDS
          Length = 529

 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/223 (26%), Positives = 101/223 (45%), Gaps = 25/223 (11%)

Query: 81  NKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLGEAEAAVGVG-----TVGSSEAIMLAGL 135
           + N + MD +      +   V M A L    LG  E A G       T G +E+I+LA +
Sbjct: 145 HTNPLHMDVFQSVVRFEVEVVAMTAAL----LGSKEKASGGQICGNMTSGGTESILLA-V 199

Query: 136 AFKRKWQNRRKAQGKPIDNPNIVTGANVQVCWEKFARYFEVELKEVKLKPDYYVLDPEKA 195
              R +   ++     I  P ++   +    ++K A+YF ++L  V +  ++   D +  
Sbjct: 200 KTSRDYMKAKRG----ITRPEMIIPESAHSAYDKAAQYFNIKLLRVPVNKEFQA-DVKGI 254

Query: 196 VEMVDENTICVAAILGSTLNGEFEDVKQLNDLLMEKNKETGWETPIHVDAASGGFIAPFL 255
              +++NTI +        +G  + +++L +L       + +    HVD   GGF+ PF 
Sbjct: 255 RRHINKNTILIVGSAPGFPHGIIDPIEELGEL------ASSFGICFHVDLCLGGFVLPFA 308

Query: 256 ----YPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRSKE 294
               YP   +DF +  V SI+V  HKYGL   G   V++R+ +
Sbjct: 309 RKLGYPIPPFDFSVEGVTSISVDVHKYGLAPKGTSVVLYRNHD 351